RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 DARS2Q6PI48 645 aaKnown RBP19.02■□□□□ 0.64
CLN3-260ENST00000637578 CHST15Q7LFX5 561 aaPredicted RBP19.02■□□□□ 0.64
CLN3-260ENST00000637578 TMPRSS9Q7Z410 1059 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 SFRP1Q8N474 314 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 TTC13Q8NBP0 860 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 PBKQ96KB5 322 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 SPATA13Q96N96 652 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 TMEM74Q96NL1 305 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 OR2AG1Q9H205 316 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.02■□□□□ 0.64
CLN3-260ENST00000637578 LHX6Q9UPM6 363 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 AAR2Q9Y312 384 aaKnown RBP19.02■□□□□ 0.64
CLN3-260ENST00000637578 ADAMTS20P59510 1910 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 FAM208BQ5VWN6 2430 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 PMS2P1A4D2B8 440 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 CDRT15L2A8MXV6 281 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 KCNN4O15554 427 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 EML2O95834 649 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 AGTP01019 485 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 TNNT3P45378 269 aaPredicted RBP19.02■□□□□ 0.63
CLN3-260ENST00000637578 INHBCP55103 352 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 OR1D5P58170 312 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 MSLNQ13421 630 aaPredicted RBP19.02■□□□□ 0.63
CLN3-260ENST00000637578 SIX1Q15475 284 aaPredicted RBP19.02■□□□□ 0.63
CLN3-260ENST00000637578 ZNF648Q5T619 568 aaPredicted RBP19.02■□□□□ 0.63
CLN3-260ENST00000637578 PAPD7Q5XG87 772 aaKnown RBP19.02■□□□□ 0.63
CLN3-260ENST00000637578 SLITRK4Q8IW52 837 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 ATG4AQ8WYN0 398 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 C16orf45Q96MC5 204 aaPredicted RBP19.02■□□□□ 0.63
CLN3-260ENST00000637578 DCBLD2Q96PD2 775 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 FSD1LQ9BXM9 530 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 FOXP3Q9BZS1 431 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 BPIFA1Q9NP55 256 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 ARFGAP3Q9NP61 516 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 TBC1D29Q9UFV1 150 aa19.02■□□□□ 0.63
CLN3-260ENST00000637578 ATXN7L1Q9ULK2 861 aaPredicted RBP19.02■□□□□ 0.63
CLN3-260ENST00000637578 ITPR1Q14643 2758 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 C5orf60A6NFR6 353 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 RRP8O43159 456 aaKnown RBP19.01■□□□□ 0.63
CLN3-260ENST00000637578 PPFIA2O75334 1257 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 ATP13A5Q4VNC0 1218 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 IYDQ6PHW0 289 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 CLEC14AQ86T13 490 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 PHYKPLQ8IUZ5 450 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 RASGEF1CQ8N431 466 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 CCDC110Q8TBZ0 833 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 MS4A14Q96JA4 679 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 STRADBQ9C0K7 418 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 THSD1Q9NS62 852 aa19.01■□□□□ 0.63
CLN3-260ENST00000637578 SCN8AQ9UQD0 1980 aa19■□□□□ 0.63
CLN3-260ENST00000637578 KIF26BQ2KJY2 2108 aa19■□□□□ 0.63
CLN3-260ENST00000637578 PRR19A6NJB7 356 aa19■□□□□ 0.63
CLN3-260ENST00000637578 GAPDHSO14556 408 aaPredicted RBP19■□□□□ 0.63
CLN3-260ENST00000637578 ZNF185O15231 689 aa19■□□□□ 0.63
CLN3-260ENST00000637578 ZW10O43264 779 aa19■□□□□ 0.63
CLN3-260ENST00000637578 VEGFDO43915 354 aa19■□□□□ 0.63
CLN3-260ENST00000637578 STK10O94804 968 aaKnown RBP19■□□□□ 0.63
CLN3-260ENST00000637578 CPNE6O95741 557 aa19■□□□□ 0.63
CLN3-260ENST00000637578 ACP5P13686 325 aa19■□□□□ 0.63
CLN3-260ENST00000637578 TCP1P17987 556 aaKnown RBP19■□□□□ 0.63
CLN3-260ENST00000637578 ITPKBP27987 946 aa19■□□□□ 0.63
CLN3-260ENST00000637578 PSMB4P28070 264 aa19■□□□□ 0.63
CLN3-260ENST00000637578 CD1CP29017 333 aa19■□□□□ 0.63
CLN3-260ENST00000637578 RBMS1P29558 406 aaKnown RBP19■□□□□ 0.63
CLN3-260ENST00000637578 ALDH4A1P30038 563 aa19■□□□□ 0.63
CLN3-260ENST00000637578 PCBP4P57723 403 aaKnown RBP19■□□□□ 0.63
CLN3-260ENST00000637578 LONRF2Q1L5Z9 754 aa19■□□□□ 0.63
CLN3-260ENST00000637578 KHDC1Q4VXA5 237 aaKnown RBP19■□□□□ 0.63
CLN3-260ENST00000637578 CHCHD2P9Q5T1J5 151 aaPredicted RBP19■□□□□ 0.63
CLN3-260ENST00000637578 SYT10Q6XYQ8 523 aa19■□□□□ 0.63
CLN3-260ENST00000637578 GLT6D1Q7Z4J2 308 aa19■□□□□ 0.63
CLN3-260ENST00000637578 ZNF248Q8NDW4 579 aa19■□□□□ 0.63
CLN3-260ENST00000637578 SLC35B2Q8TB61 432 aa19■□□□□ 0.63
CLN3-260ENST00000637578 BLOC1S5Q8TDH9 187 aa19■□□□□ 0.63
CLN3-260ENST00000637578 SLC37A2Q8TED4 501 aa19■□□□□ 0.63
CLN3-260ENST00000637578 C1orf54Q8WWF1 131 aa19■□□□□ 0.63
CLN3-260ENST00000637578 PPP1R2P1Q96PQ5 205 aa19■□□□□ 0.63
CLN3-260ENST00000637578 FICDQ9BVA6 458 aa19■□□□□ 0.63
CLN3-260ENST00000637578 SMARCAL1Q9NZC9 954 aa19■□□□□ 0.63
CLN3-260ENST00000637578 RALYQ9UKM9 306 aaKnown RBP19■□□□□ 0.63
CLN3-260ENST00000637578 ZFYVE26Q68DK2 2539 aa19■□□□□ 0.63
CLN3-260ENST00000637578 CES2O00748 559 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 PLD2O14939 933 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 ITGA2BP08514 1039 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 SPAM1P38567 509 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 ZNF574Q6ZN55 896 aaPredicted RBP18.99■□□□□ 0.63
CLN3-260ENST00000637578 LRRC69Q6ZNQ3 347 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 RAB11FIP2Q7L804 512 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 PIM3Q86V86 326 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 ZNF547Q8IVP9 402 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 TMEM159Q96B96 161 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 ARNT2Q9HBZ2 717 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 EPB41L5Q9HCM4 733 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 TTC7AQ9ULT0 858 aaPredicted RBP18.99■□□□□ 0.63
CLN3-260ENST00000637578 KCNK6Q9Y257 313 aa18.99■□□□□ 0.63
CLN3-260ENST00000637578 ZFC3H1O60293 1989 aaKnown RBP18.99■□□□□ 0.63
CLN3-260ENST00000637578 IGHV1OR21-1A0A087WYE8 117 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 F3P13726 295 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 UGT1A5P35504 534 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 ABCG1P45844 678 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms