RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ADRB3P13945 408 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 ATP5F1P24539 256 aaPredicted RBP16.7■□□□□ 0.26
CLN3-252ENST00000636907 CTHP32929 405 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 SKIV2L2P42285 1042 aaKnown RBP16.7■□□□□ 0.26
CLN3-252ENST00000636907 KIR2DL1P43626 348 aaPredicted RBP16.7■□□□□ 0.26
CLN3-252ENST00000636907 NKAPQ8N5F7 415 aaKnown RBP16.7■□□□□ 0.26
CLN3-252ENST00000636907 LKAAEAR1Q8TD35 194 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 LRCH3Q96II8 777 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 WRAP53Q9BUR4 548 aaKnown RBP16.7■□□□□ 0.26
CLN3-252ENST00000636907 RIOK2Q9BVS4 552 aaKnown RBP16.7■□□□□ 0.26
CLN3-252ENST00000636907 KCNK13Q9HB14 408 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 DYRK4Q9NR20 520 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 RAD18Q9NS91 495 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 NFKBIL1Q9UBC1 381 aaPredicted RBP16.7■□□□□ 0.26
CLN3-252ENST00000636907 MARCOQ9UEW3 520 aaPredicted RBP16.7■□□□□ 0.26
CLN3-252ENST00000636907 RGSL1A5PLK6 1076 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 TMEM114B3SHH9 223 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 AREL1O15033 823 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 TSPAN12O95859 305 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 KITP10721 976 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 ITGB6P18564 788 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 TIE1P35590 1138 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 NSG1P42857 185 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 LIG3P49916 1009 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 B4GALNT1Q00973 533 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 SMAD4Q13485 552 aaKnown RBP16.69■□□□□ 0.26
CLN3-252ENST00000636907 ACOX1Q15067 660 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 OR4D1Q15615 310 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 CCDC85BQ15834 202 aaPredicted RBP16.69■□□□□ 0.26
CLN3-252ENST00000636907 UGT3A1Q6NUS8 523 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 MACC1Q6ZN28 852 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 ERN2Q76MJ5 926 aaKnown RBP16.69■□□□□ 0.26
CLN3-252ENST00000636907 CPNE9Q8IYJ1 553 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 DTX3LQ8TDB6 740 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 COPS8Q99627 209 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 TFB2MQ9H5Q4 396 aaKnown RBP16.69■□□□□ 0.26
CLN3-252ENST00000636907 UBE2ZQ9H832 354 aaPredicted RBP16.69■□□□□ 0.26
CLN3-252ENST00000636907 KCNK12Q9HB15 430 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 IKZF3Q9UKT9 509 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 DNAJC16Q9Y2G8 782 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 DHRS7Q9Y394 339 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 USH1CQ9Y6N9 552 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 IGLV3-16A0A075B6K0 115 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 A0A0G2JND7 137 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 CCT8L1PA6NM43 557 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 A8MT66 165 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 PSMD11O00231 422 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 NPC1O15118 1278 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 NAGLUP54802 743 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 ELP6Q0PNE2 266 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 GPRC6AQ5T6X5 926 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 HENMT1Q5T8I9 393 aaKnown RBP16.69■□□□□ 0.26
CLN3-252ENST00000636907 TRAM1L1Q8N609 369 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 PPP4R1Q8TF05 950 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 LINGO1Q96FE5 620 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 PLCD4Q9BRC7 762 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 HDAC8Q9BY41 377 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 CYP4F12Q9HCS2 524 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 ABCF3Q9NUQ8 709 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 SMOXQ9NWM0 555 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 LIMD1Q9UGP4 676 aa16.69■□□□□ 0.26
CLN3-252ENST00000636907 UNC80Q8N2C7 3258 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 FADS2P1A8MWK0 482 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 F8W8V4 182 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 H0Y858 1186 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 SLC25A14O95258 325 aaPredicted RBP16.68■□□□□ 0.26
CLN3-252ENST00000636907 HSPA4LO95757 839 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 P2RY2P41231 377 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 CCR10P46092 362 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 DNAJB13P59910 316 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 IL2P60568 153 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 ATP6V0D1P61421 351 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 ASPHQ12797 758 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 CNTN1Q12860 1018 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 CAMK2GQ13555 558 aaPredicted RBP16.68■□□□□ 0.26
CLN3-252ENST00000636907 TRPM8Q7Z2W7 1104 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 CACUL1Q86Y37 369 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 SLC44A3Q8N4M1 653 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 RHEBL1Q8TAI7 183 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 EEF1AKMT1Q8WVE0 214 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 KIAA1191Q96A73 305 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 COQ10AQ96MF6 247 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 ATOH8Q96SQ7 321 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 ZSCAN5AQ9BUG6 496 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 TMEM120AQ9BXJ8 343 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 DRC3Q9H069 523 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 CDH19Q9H159 772 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 TRPV5Q9NQA5 729 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 HEBP1Q9NRV9 189 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 PNPOQ9NVS9 261 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 COQ6Q9Y2Z9 468 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 PIAS3Q9Y6X2 628 aa16.68■□□□□ 0.26
CLN3-252ENST00000636907 WNT9AO14904 365 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 IPO13O94829 963 aaKnown RBP16.67■□□□□ 0.26
CLN3-252ENST00000636907 TRIM16O95361 564 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 EGFP01133 1207 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 ARFIP2P53365 341 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 RCN2Q14257 317 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 PON2Q15165 354 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 E2F5Q15329 346 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms