RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SUOXP51687 545 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 DCDC1P59894 354 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 TMEM31Q5JXX7 168 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 ZDHHC20Q5W0Z9 365 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 SEL1L3Q68CR1 1132 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 ZCCHC23Q6ZST2 131 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 SCG3Q8WXD2 468 aaKnown RBP19.91■□□□□ 0.78
CLN3-250ENST00000636839 CHMP6Q96FZ7 201 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 ZDHHC3Q9NYG2 299 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 TAS2R13Q9NYV9 303 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.91■□□□□ 0.78
CLN3-250ENST00000636839 TSR3Q9UJK0 312 aaKnown RBP19.91■□□□□ 0.78
CLN3-250ENST00000636839 IKZF3Q9UKT9 509 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 G3V2L1 256 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 PFDN6O15212 129 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 PCDH8O95206 1070 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 ESR1P03372 595 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 BPGMP07738 259 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 ADARP55265 1226 aaKnown RBP19.9■□□□□ 0.78
CLN3-250ENST00000636839 PDAP1Q13442 181 aaKnown RBP19.9■□□□□ 0.78
CLN3-250ENST00000636839 ITGA9Q13797 1035 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 PCLAFQ15004 111 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 PTRHD1Q6GMV3 140 aaKnown RBP19.9■□□□□ 0.78
CLN3-250ENST00000636839 LRRC8EQ6NSJ5 796 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 FAM47EQ6ZV65 393 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 C10orf107Q8IVU9 208 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 ADHFE1Q8IWW8 467 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 ZNF687Q8N1G0 1237 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 CXorf40AQ8TE69 158 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 KLK6Q92876 244 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 CCT8L2Q96SF2 557 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 COPS8Q99627 209 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 OSBPL6Q9BZF3 934 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 FGFR1OP2Q9NVK5 253 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 OAS3Q9Y6K5 1087 aaKnown RBP19.9■□□□□ 0.78
CLN3-250ENST00000636839 A6NNZ2 444 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 TRIM16O95361 564 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 CHRNB1P11230 501 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 ZNF37AP17032 561 aaPredicted RBP19.9■□□□□ 0.78
CLN3-250ENST00000636839 DRD4P21917 467 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 CLCN7P51798 805 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 TUBB8Q3ZCM7 444 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 TRIM74Q86UV6 250 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 FAM124AQ86V42 546 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 NUDCD3Q8IVD9 361 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 TRAM1L1Q8N609 369 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 CD200R1Q8TD46 325 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 MRGPRX1Q96LB2 322 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 XPR1Q9UBH6 696 aa19.9■□□□□ 0.78
CLN3-250ENST00000636839 PSMD11O00231 422 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 ZBTB14O43829 449 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 LTA4HP09960 611 aaKnown RBP19.89■□□□□ 0.77
CLN3-250ENST00000636839 COL6A2P12110 1019 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 E2F5Q15329 346 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 ZNF284Q2VY69 593 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 PUS10Q3MIT2 529 aaKnown RBP19.89■□□□□ 0.77
CLN3-250ENST00000636839 ZNF852Q6ZMS4 543 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 PLA2G15Q8NCC3 412 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 BCAS4Q8TDM0 211 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 RAB7BQ96AH8 199 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 PTERQ96BW5 349 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 NUS1Q96E22 293 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 MANSC1Q9H8J5 431 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 COPG2Q9UBF2 871 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 CNOT6Q9ULM6 557 aaKnown RBP19.89■□□□□ 0.77
CLN3-250ENST00000636839 DOCK9Q9BZ29 2069 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 PLXNA2O75051 1894 aa19.89■□□□□ 0.77
CLN3-250ENST00000636839 TARM1B6A8C7 271 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 E5RI56 91 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 SLC25A14O95258 325 aaPredicted RBP19.88■□□□□ 0.77
CLN3-250ENST00000636839 DNTTP04053 509 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 NEFHP12036 1026 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 CPA3P15088 417 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 NDUFV2P19404 249 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 RPS3P23396 243 aaKnown RBP eCLIP19.88■□□□□ 0.774e-6■■□□□ 12.9
CLN3-250ENST00000636839 TARSP26639 723 aaKnown RBP19.88■□□□□ 0.77
CLN3-250ENST00000636839 CHI3L2Q15782 390 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 CCDC153Q494R4 210 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 LYPLAL1Q5VWZ2 237 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 TRMT11Q7Z4G4 463 aaKnown RBP19.88■□□□□ 0.77
CLN3-250ENST00000636839 CPNE9Q8IYJ1 553 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 CNPY4Q8N129 248 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 OR14C36Q8NHC7 312 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 LRRC8CQ8TDW0 803 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 KCNJ9Q92806 393 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 SIPA1Q96FS4 1042 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 TTC1Q99614 292 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 ZSCAN5AQ9BUG6 496 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 ARHGEF3Q9NR81 526 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 ZFR2Q9UPR6 939 aaKnown RBP19.88■□□□□ 0.77
CLN3-250ENST00000636839 IGLV3-16A0A075B6K0 115 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 TCRBV21S2A2A0A5A6 115 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 RGSL1A5PLK6 1076 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 VPS26AO75436 327 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 AKT1P31749 480 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 PPARGP37231 505 aaPredicted RBP19.88■□□□□ 0.77
CLN3-250ENST00000636839 FGL2Q14314 439 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 FBXO43Q4G163 708 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 ATG14Q6ZNE5 492 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 NRSN1Q8IZ57 195 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms