RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.3□□□□□ -0.12
CLN3-249ENST00000636685 BICDL2A1A5D9 508 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 FGF10O15520 208 aaPredicted RBP14.3□□□□□ -0.12
CLN3-249ENST00000636685 CPNE3O75131 537 aaKnown RBP14.3□□□□□ -0.12
CLN3-249ENST00000636685 LSM8O95777 96 aaKnown RBP14.3□□□□□ -0.12
CLN3-249ENST00000636685 XRCC1P18887 633 aaPredicted RBP14.3□□□□□ -0.12
CLN3-249ENST00000636685 SLC19A1P41440 591 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 RRADP55042 308 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 TRAF2Q12933 501 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 SCYL2Q6P3W7 929 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 TRIM48Q8IWZ4 208 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 FMR1NBQ8N0W7 255 aaPredicted RBP14.3□□□□□ -0.12
CLN3-249ENST00000636685 MMP21Q8N119 569 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 SLC38A9Q8NBW4 561 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 EXD1Q8NHP7 514 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 SCRN2Q96FV2 425 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 ZDHHC12Q96GR4 267 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 SGSM3Q96HU1 749 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 SLC41A2Q96JW4 573 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 RIOK2Q9BVS4 552 aaKnown RBP14.3□□□□□ -0.12
CLN3-249ENST00000636685 TRIM8Q9BZR9 551 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 VPS18Q9P253 973 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 ZNF624Q9P2J8 865 aaPredicted RBP14.3□□□□□ -0.12
CLN3-249ENST00000636685 MAN1B1Q9UKM7 699 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 TCFL5Q9UL49 500 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 CNOT6Q9ULM6 557 aaKnown RBP14.3□□□□□ -0.12
CLN3-249ENST00000636685 FZD10Q9ULW2 581 aa14.3□□□□□ -0.12
CLN3-249ENST00000636685 A0A1W2PQ67 120 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 SOCS5O75159 536 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 SCRG1O75711 98 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 MMEP08473 750 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 COX6B1P14854 86 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 KRTAP10-9P60411 292 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 LRRC66Q68CR7 880 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 IGFL3Q6UXB1 125 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 Q6ZS92 163 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 NOP9Q86U38 636 aaKnown RBP14.29□□□□□ -0.12
CLN3-249ENST00000636685 CREBRFQ8IUR6 639 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 PHYKPLQ8IUZ5 450 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 ZNF514Q96K75 400 aaPredicted RBP14.29□□□□□ -0.12
CLN3-249ENST00000636685 PSKH2Q96QS6 385 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 MCCC1Q96RQ3 725 aaPredicted RBP14.29□□□□□ -0.12
CLN3-249ENST00000636685 OSGEPL1Q9H4B0 414 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 ZBTB20Q9HC78 741 aaPredicted RBP14.29□□□□□ -0.12
CLN3-249ENST00000636685 FGF21Q9NSA1 209 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 TMEM63CQ9P1W3 806 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 KIAA1468Q9P260 1216 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 SIK3Q9Y2K2 1263 aa14.29□□□□□ -0.12
CLN3-249ENST00000636685 KLF2Q9Y5W3 355 aaPredicted RBP14.29□□□□□ -0.12
CLN3-249ENST00000636685 DFFAO00273 331 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 RAB40ALP0C0E4 278 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 RFC1P35251 1148 aaPredicted RBP14.28□□□□□ -0.12
CLN3-249ENST00000636685 PPP1R2P41236 205 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 RENBPP51606 427 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 TPI1P60174 286 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 ACY1Q03154 408 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 PTSQ03393 145 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 SLC10A7Q0GE19 358 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 RFTN1Q14699 578 aaPredicted RBP14.28□□□□□ -0.12
CLN3-249ENST00000636685 SMYD5Q6GMV2 418 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 USP45Q70EL2 814 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 ZNF765Q7L2R6 523 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 TMEM126BQ8IUX1 230 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 ARHGAP12Q8IWW6 846 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 ZNF295-AS1Q8N0V1 137 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 NXPE1Q8N323 547 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 ITLN2Q8WWU7 325 aaPredicted RBP14.28□□□□□ -0.12
CLN3-249ENST00000636685 DOCK10Q96BY6 2186 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 C11orf70Q9BRQ4 267 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 NOD2Q9HC29 1040 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 LATS2Q9NRM7 1088 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 KLC4Q9NSK0 619 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 SEMA5BQ9P283 1151 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 EPHA6Q9UF33 1036 aa14.28□□□□□ -0.12
CLN3-249ENST00000636685 A0A1B0GUH1 482 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 GRID2O43424 1007 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 PGLSO95336 258 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 PYGLP06737 847 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 STSP08842 583 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 EDN3P14138 238 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 BPIP17213 487 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 GPD1P21695 349 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 IL10RBQ08334 325 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 GPR18Q14330 331 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 LBRQ14739 615 aaKnown RBP14.27□□□□□ -0.13
CLN3-249ENST00000636685 SEPT7Q16181 437 aaKnown RBP14.27□□□□□ -0.13
CLN3-249ENST00000636685 PLEKHS1Q5SXH7 462 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 PRAMEF17Q5VTA0 474 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 NLRP8Q86W28 1048 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 BPHLQ86WA6 291 aaPredicted RBP14.27□□□□□ -0.13
CLN3-249ENST00000636685 PGBD5Q8N414 524 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 ZADH2Q8N4Q0 377 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 SLC30A5Q8TAD4 765 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 GRHL3Q8TE85 626 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 SNX21Q969T3 373 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 NLNQ9BYT8 704 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 ZNF552Q9H707 407 aaPredicted RBP14.27□□□□□ -0.13
CLN3-249ENST00000636685 GDPD2Q9HCC8 539 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 GPATCH2LQ9NWQ4 482 aa14.27□□□□□ -0.13
CLN3-249ENST00000636685 CSAG2Q9Y5P2 127 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms