RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 ALS2CLQ60I27 953 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 PDPK2PQ6A1A2 396 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 SLC9A4Q6AI14 798 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 VSIG1Q86XK7 387 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 PLXDC1Q8IUK5 500 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 GPR26Q8NDV2 337 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 IMP4Q96G21 291 aaKnown RBP23.61■■□□□ 1.37
LSM4-202ENST00000593564 TRIT1Q9H3H1 467 aaKnown RBP23.61■■□□□ 1.37
LSM4-202ENST00000593564 MAGEE1Q9HCI5 957 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 APMAPQ9HDC9 416 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 RAD18Q9NS91 495 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 KLC4Q9NSK0 619 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 IFNKQ9P0W0 207 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 KLHL3Q9UH77 587 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 HEY1Q9Y5J3 304 aa23.61■■□□□ 1.37
LSM4-202ENST00000593564 LRRD1A4D1F6 860 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 GOLGA6L19H0YKK7 550 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 CHUKO15111 745 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 POLR1CO15160 346 aaPredicted RBP23.6■■□□□ 1.37
LSM4-202ENST00000593564 STK17BO94768 372 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 TMEM253P0C7T8 217 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 XRCC1P18887 633 aaPredicted RBP23.6■■□□□ 1.37
LSM4-202ENST00000593564 ABHD18Q0P651 414 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 ZNF648Q5T619 568 aaPredicted RBP23.6■■□□□ 1.37
LSM4-202ENST00000593564 TIPARPQ7Z3E1 657 aaKnown RBP23.6■■□□□ 1.37
LSM4-202ENST00000593564 TMC3Q7Z5M5 1100 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 ADGRG6Q86SQ4 1221 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 TRAM1L1Q8N609 369 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 GLYATL1Q969I3 302 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 PLEKHG4BQ96PX9 1271 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 OSGEPL1Q9H4B0 414 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 SIDT1Q9NXL6 827 aaKnown RBP23.6■■□□□ 1.37
LSM4-202ENST00000593564 SHOC2Q9UQ13 582 aa23.6■■□□□ 1.37
LSM4-202ENST00000593564 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.6■■□□□ 1.373e-6■■■□□ 18.4
LSM4-202ENST00000593564 LOC101059948A0A1B0GTJ6 334 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 C3orf70A6NLC5 250 aaPredicted RBP23.59■■□□□ 1.37
LSM4-202ENST00000593564 NKX2-8O15522 239 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 MTA2O94776 668 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 AP1B1Q10567 949 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 MESDQ14696 234 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 PDK1Q15118 436 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 ASTE1Q2TB18 679 aaPredicted RBP23.59■■□□□ 1.37
LSM4-202ENST00000593564 NT5DC3Q86UY8 548 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 TRAF3IP1Q8TDR0 691 aaPredicted RBP23.59■■□□□ 1.37
LSM4-202ENST00000593564 TADA1Q96BN2 335 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 OLFM3Q96PB7 478 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 CEP41Q9BYV8 373 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 SLC25A51Q9H1U9 297 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 SCHIP1Q9P0W5 487 aaPredicted RBP23.59■■□□□ 1.37
LSM4-202ENST00000593564 ZNF711Q9Y462 761 aa23.59■■□□□ 1.37
LSM4-202ENST00000593564 APOL1O14791 398 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 DLGAP3O95886 979 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 C9P02748 559 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 PIRTP0C851 137 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 CDK18Q07002 472 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 CDC20Q12834 499 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 MAP7Q14244 749 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 SLC14A2Q15849 920 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 CRTC3Q6UUV7 619 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 TMEM26Q6ZUK4 368 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 KDELC2Q7Z4H8 507 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 UNC5BQ8IZJ1 945 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 C9orf72Q96LT7 481 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 AGAP3Q96P47 875 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 TIMM29Q9BSF4 260 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 BRD8Q9H0E9 1235 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 OGFRQ9NZT2 677 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 SLC23A2Q9UGH3 650 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 PTPN13Q12923 2485 aa23.58■■□□□ 1.37
LSM4-202ENST00000593564 PRR19A6NJB7 356 aa23.57■■□□□ 1.36
LSM4-202ENST00000593564 PPP1R12AO14974 1030 aaPredicted RBP23.57■■□□□ 1.36
LSM4-202ENST00000593564 KMOO15229 486 aa23.57■■□□□ 1.36
LSM4-202ENST00000593564 GFERP55789 205 aa23.57■■□□□ 1.36
LSM4-202ENST00000593564 TLE1Q04724 770 aa23.57■■□□□ 1.36
LSM4-202ENST00000593564 PCSK7Q16549 785 aa23.57■■□□□ 1.36
LSM4-202ENST00000593564 INSCQ1MX18 579 aa23.57■■□□□ 1.36
LSM4-202ENST00000593564 FAM182AQ5T1J6 154 aa23.57■■□□□ 1.36
LSM4-202ENST00000593564 SLC35G2Q8TBE7 412 aa23.57■■□□□ 1.36
LSM4-202ENST00000593564 MAK16Q9BXY0 300 aaKnown RBP23.57■■□□□ 1.36
LSM4-202ENST00000593564 GPR63Q9BZJ6 419 aa23.57■■□□□ 1.36
LSM4-202ENST00000593564 SSU72P8A0A1W2PR75 194 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 TOX3O15405 576 aaPredicted RBP23.56■■□□□ 1.36
LSM4-202ENST00000593564 UBXN7O94888 489 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 VIPP01282 170 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 SLC4A1P02730 911 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 PRKAR1AP10644 381 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 ZFXP17010 805 aaPredicted RBP23.56■■□□□ 1.36
LSM4-202ENST00000593564 ZNF7P17097 686 aaPredicted RBP23.56■■□□□ 1.36
LSM4-202ENST00000593564 SLC19A1P41440 591 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 STAT5AP42229 794 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 ARHGAP25P42331 645 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 NOP2P46087 812 aaKnown RBP23.56■■□□□ 1.36
LSM4-202ENST00000593564 MC1RQ01726 317 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 PLA2G4EQ3MJ16 856 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 CRTC2Q53ET0 693 aaPredicted RBP23.56■■□□□ 1.36
LSM4-202ENST00000593564 LRRTM4Q86VH4 590 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 PTRH1Q86Y79 214 aaKnown RBP23.56■■□□□ 1.36
LSM4-202ENST00000593564 TRIM48Q8IWZ4 208 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 ESX1Q8N693 406 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 SRPK1Q96SB4 655 aaKnown RBP23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms