RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 KIAA0930Q6ICG6 404 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 LCN10Q6JVE6 187 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 C9orf139Q6ZV77 190 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 ASB18Q6ZVZ8 466 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 SLC9B2Q86UD5 537 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 TMPRSS12Q86WS5 348 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 ADGRF2Q8IZF7 708 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 TMTC2Q8N394 836 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 UTP15Q8TED0 518 aaKnown RBP4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 SLC38A5Q8WUX1 472 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 SLC44A1Q8WWI5 657 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 PGAM5Q96HS1 289 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 NUDCD1Q96RS6 583 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 GAD1Q99259 594 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 SEMA3CQ99985 751 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 TREX2Q9BQ50 279 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 TMEM39BQ9GZU3 492 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 TBC1D22BQ9NU19 505 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 OGFRQ9NZT2 677 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 KCNG2Q9UJ96 466 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 ICAM5Q9UMF0 924 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 ZNF711Q9Y462 761 aa4.43□□□□□ -1.7
SMCHD1-204ENST00000581226 PRR23D1E9PI22 279 aaPredicted RBP4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 MAP2K7O14733 419 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 ZNHIT1O43257 154 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 WDR1O75083 606 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 RB1P06400 928 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 PRR23D2P0DMB1 279 aaPredicted RBP4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 POLR2CP19387 275 aaPredicted RBP4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 ACADLP28330 430 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 GARSP41250 739 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 MSH2P43246 934 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 EIF5P55010 431 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 DRG2P55039 364 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 ITPRIPL1Q6GPH6 555 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 CFAP77Q6ZQR2 320 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 CLEC17AQ6ZS10 378 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 FOXL2NBQ6ZUU3 175 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 ZNF771Q7L3S4 317 aaPredicted RBP4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 MUC20Q8N307 709 aaPredicted RBP4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 RASGEF1CQ8N431 466 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 EMC1Q8N766 993 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 IL17RCQ8NAC3 791 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 TRPC4APQ8TEL6 797 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 MOAP1Q96BY2 351 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 SDF4Q9BRK5 362 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 SYNCQ9H7C4 482 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 KLHL1Q9NR64 748 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 FBXL17Q9UF56 701 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 NENFQ9UMX5 172 aa4.42□□□□□ -1.7
SMCHD1-204ENST00000581226 A0A1W2PS18 150 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 C16orf97H3BN30 126 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 VILLO15195 856 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 SMAD9O15198 467 aaKnown RBP4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 PLPP2O43688 288 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 TPPPO94811 219 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 ZNF432O94892 652 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 FAM106CPP0CH98 169 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 CETPP11597 493 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 HOXA13P31271 388 aaPredicted RBP4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 GPR143P51810 404 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 DLX5P56178 289 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 PLIN5Q00G26 463 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 ZRSR1Q15695 479 aaKnown RBP4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 TMEM198Q66K66 360 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 OR7E24Q6IFN5 339 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 RAD9BQ6WBX8 426 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 ZNF704Q6ZNC4 412 aaPredicted RBP4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 DSG4Q86SJ6 1040 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 C1orf131Q8NDD1 294 aaKnown RBP4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 OR13A1Q8NGR1 328 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 GSDMBQ8TAX9 411 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 EPYCQ99645 322 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 NEURL2Q9BR09 285 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 SRSF8Q9BRL6 282 aaKnown RBP4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 LRMDAQ9H2I8 198 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 TCP11L1Q9NUJ3 509 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 ABCF3Q9NUQ8 709 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 HAUS2Q9NVX0 235 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 DBNLQ9UJU6 430 aaKnown RBP4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 ZNF215Q9UL58 517 aaPredicted RBP4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 CMAHPQ9Y471 501 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 TAF1P21675 1872 aa4.41□□□□□ -1.7
SMCHD1-204ENST00000581226 PRAG1Q86YV5 1406 aa4.4□□□□□ -1.7
SMCHD1-204ENST00000581226 ANKRD18BA2A2Z9 1011 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 A6NCN8 305 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 PON1P27169 355 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 FMO5P49326 533 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 CLNS1AP54105 237 aaKnown RBP4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 TERF1P54274 439 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 ARL16Q0P5N6 197 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 LMOD3Q0VAK6 560 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 STXBP5Q5T5C0 1151 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 FAM205BPQ63HN1 556 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 FAM171BQ6P995 826 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 GDPD4Q6W3E5 623 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 ATG9AQ7Z3C6 839 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 PM20D2Q8IYS1 436 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 SLC5A8Q8N695 610 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 KBTBD3Q8NAB2 608 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms