RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 FLNCQ14315 2725 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 OR5K4A6NMS3 321 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 SLC25A14O95258 325 aaPredicted RBP16.64■□□□□ 0.25
CLN3-211ENST00000564091 SLC4A1P02730 911 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 FOXM1Q08050 763 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 PLA2G4EQ3MJ16 856 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 ADGRG6Q86SQ4 1221 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 LUZP1Q86V48 1076 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 PLXDC1Q8IUK5 500 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 GPR26Q8NDV2 337 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 STARD8Q92502 1023 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 EFHD1Q9BUP0 239 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 PACSIN1Q9BY11 444 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 ADGRE3Q9BY15 652 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 TRIM39Q9HCM9 518 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 SIDT1Q9NXL6 827 aaKnown RBP16.64■□□□□ 0.25
CLN3-211ENST00000564091 OGFRQ9NZT2 677 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 NENFQ9UMX5 172 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 DNAJC16Q9Y2G8 782 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 MRPS18BQ9Y676 258 aaKnown RBP16.64■□□□□ 0.25
CLN3-211ENST00000564091 SLC30A1Q9Y6M5 507 aa16.64■□□□□ 0.25
CLN3-211ENST00000564091 LILRA5A6NI73 299 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 MTX2O75431 263 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 DLGAP3O95886 979 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 VIPP01282 170 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 KRT7P08729 469 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 ZNF28P17035 718 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 F8A1P23610 371 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 KDELR1P24390 212 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 SLC19A1P41440 591 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 UBASH3AP57075 661 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 SEPT7Q16181 437 aaKnown RBP16.63■□□□□ 0.25
CLN3-211ENST00000564091 ZNF569Q5MCW4 686 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 C9orf43Q8TAL5 461 aaPredicted RBP16.63■□□□□ 0.25
CLN3-211ENST00000564091 ABHD17AQ96GS6 310 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 C9orf72Q96LT7 481 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 TGM7Q96PF1 710 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 RNF157Q96PX1 679 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 TRIB3Q96RU7 358 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 TRIT1Q9H3H1 467 aaKnown RBP16.63■□□□□ 0.25
CLN3-211ENST00000564091 EPB41L1Q9H4G0 881 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 CBX8Q9HC52 389 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 ZNF624Q9P2J8 865 aaPredicted RBP16.63■□□□□ 0.25
CLN3-211ENST00000564091 LUC7L2Q9Y383 392 aaKnown RBP16.63■□□□□ 0.25
CLN3-211ENST00000564091 HEY1Q9Y5J3 304 aa16.63■□□□□ 0.25
CLN3-211ENST00000564091 PDZK1P1A8MUH7 402 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 UBXN7O94888 489 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 ANKRD34CP0C6C1 535 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 XRCC1P18887 633 aaPredicted RBP16.62■□□□□ 0.25
CLN3-211ENST00000564091 TCN2P20062 427 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 STAT5AP42229 794 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 LEPRP48357 1165 aaKnown RBP16.62■□□□□ 0.25
CLN3-211ENST00000564091 SEPHS1P49903 392 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 CLCNKAP51800 687 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 SH3BP2P78314 561 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 IFI35P80217 286 aaPredicted RBP16.62■□□□□ 0.25
CLN3-211ENST00000564091 SRSF1Q07955 248 aaKnown RBP eCLIP16.62■□□□□ 0.25
CLN3-211ENST00000564091 PPIDQ08752 370 aaKnown RBP16.62■□□□□ 0.25
CLN3-211ENST00000564091 AP1B1Q10567 949 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 PCSK7Q16549 785 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 TMEM26Q6ZUK4 368 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 B4GALNT4Q76KP1 1039 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 ESX1Q8N693 406 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 PLD5Q8N7P1 536 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 APOBEC4Q8WW27 367 aaKnown RBP16.62■□□□□ 0.25
CLN3-211ENST00000564091 GLYATL1Q969I3 302 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 ZNF830Q96NB3 372 aaPredicted RBP16.62■□□□□ 0.25
CLN3-211ENST00000564091 AGAP3Q96P47 875 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 ULBP3Q9BZM4 244 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 UVRAGQ9P2Y5 699 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 RPS6KL1Q9Y6S9 549 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 MN1Q10571 1320 aaPredicted RBP16.62■□□□□ 0.25
CLN3-211ENST00000564091 LRRK2Q5S007 2527 aa16.62■□□□□ 0.25
CLN3-211ENST00000564091 CHUKO15111 745 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 MTA2O94776 668 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 C9P02748 559 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 GYPCP04921 128 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 H2AFZP0C0S5 128 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 AMD1P17707 334 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 RPL10P27635 214 aaKnown RBP16.61■□□□□ 0.25
CLN3-211ENST00000564091 CASRP41180 1078 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 NOP2P46087 812 aaKnown RBP16.61■□□□□ 0.25
CLN3-211ENST00000564091 INSCQ1MX18 579 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 H2AFVQ71UI9 128 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 TMC3Q7Z5M5 1100 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 TRIM48Q8IWZ4 208 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 TRAM1L1Q8N609 369 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 AVL9Q8NBF6 648 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 IMP4Q96G21 291 aaKnown RBP16.61■□□□□ 0.25
CLN3-211ENST00000564091 ELMO2Q96JJ3 720 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 ZSCAN5AQ9BUG6 496 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 GPR63Q9BZJ6 419 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 UCK1Q9HA47 277 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 TRIM10Q9UDY6 481 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 ANAPC2Q9UJX6 822 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 ZNF711Q9Y462 761 aa16.61■□□□□ 0.25
CLN3-211ENST00000564091 LRRD1A4D1F6 860 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 KIF1CO43896 1103 aaKnown RBP16.6■□□□□ 0.25
CLN3-211ENST00000564091 BRAFP15056 766 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 ZNF7P17097 686 aaPredicted RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms