RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 HDAC10Q969S8 669 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 CENPNQ96H22 339 aaPredicted RBP13.22□□□□□ -0.29
CLK3-206ENST00000562078 RPL10LQ96L21 214 aaKnown RBP13.22□□□□□ -0.29
CLK3-206ENST00000562078 SENP8Q96LD8 212 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 KCTD15Q96SI1 283 aaPredicted RBP13.22□□□□□ -0.29
CLK3-206ENST00000562078 MED10Q9BTT4 135 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 DUSP16Q9BY84 665 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 ING2Q9H160 280 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 CHRAC1Q9NRG0 131 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 MTMR10Q9NXD2 777 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 RAP2CQ9Y3L5 183 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 TIMM13Q9Y5L4 95 aaPredicted RBP13.22□□□□□ -0.29
CLK3-206ENST00000562078 SYNJ2BP-COX16A0A087WUM0 186 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 A0A0G2JMP0 313 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 A0A0X1KG70 313 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 F5H423 210 aaPredicted RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 HAT1O14929 419 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 POLR1CO15160 346 aaPredicted RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 MTSS1O43312 755 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 CAPN1P07384 714 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 CCL5P13501 91 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 POLR2CP19387 275 aaPredicted RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 CES1P23141 567 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 MAGEA3P43357 314 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 SULT1E1P49888 294 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 PPP5CP53041 499 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 RABGGTBP53611 331 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 VBP1P61758 197 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 PITX1P78337 314 aaPredicted RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 ADARB1P78563 741 aaKnown RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 GBE1Q04446 702 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 TRAF7Q6Q0C0 670 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 PAQR9Q6ZVX9 377 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 DEFB106AQ8N104 65 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 LEMD2Q8NC56 503 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 TOR1AIP2Q8NFQ8 470 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 GIPC2Q8TF65 315 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 RASSF5Q8WWW0 418 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 GLMNQ92990 594 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 BTBD2Q9BX70 525 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 NARFLQ9H6Q4 476 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 SNX15Q9NRS6 342 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 PAQR5Q9NXK6 330 aaPredicted RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 COX16Q9P0S2 106 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 EGFL7Q9UHF1 273 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 SNTNA6NMZ2 147 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 AREL1O15033 823 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 SEC24AO95486 1093 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 THP07101 528 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 CD52P31358 61 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 CD68P34810 354 aaPredicted RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 MATKP42679 507 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 NDUFV1P49821 464 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 SCNN1GP51170 649 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 C1QTNF8P60827 252 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 NIPAL4Q0D2K0 466 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 HSPA14Q0VDF9 509 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 IMPG1Q17R60 797 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 CLEC20AQ6ZU45 233 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 PAGE2Q7Z2X7 111 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 LACC1Q8IV20 430 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 PYROXD2Q8N2H3 581 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 PSD4Q8NDX1 1056 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 C3orf58Q8NDZ4 430 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 FAM83FQ8NEG4 500 aaPredicted RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 OR5H6Q8NGV6 325 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 RHOXF1Q8NHV9 184 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 PMEPA1Q969W9 287 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 LRRC39Q96DD0 335 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 TTYH2Q9BSA4 534 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 AGO3Q9H9G7 860 aaKnown RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 PAK6Q9NQU5 681 aaPredicted RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 TLR9Q9NR96 1032 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 MIOSQ9NXC5 875 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 CCDC167Q9P0B6 97 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 UBA2Q9UBT2 640 aaPredicted RBP13.21□□□□□ -0.29
CLK3-206ENST00000562078 PADI3Q9ULW8 664 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 MFHAS1Q9Y4C4 1052 aa13.21□□□□□ -0.29
CLK3-206ENST00000562078 ARL5CA6NH57 179 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 CASTOR2A6NHX0 329 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 EVPLLA8MZ36 301 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 ARVCFO00192 962 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 GABRDO14764 452 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 METTL18O95568 372 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 MT-ND1P03886 318 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 HSPA1AP0DMV8 641 aaKnown RBP13.2□□□□□ -0.3
CLK3-206ENST00000562078 HSPA1BP0DMV9 641 aaKnown RBP13.2□□□□□ -0.3
CLK3-206ENST00000562078 CRHBPP24387 322 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 GP2P55259 537 aaKnown RBP13.2□□□□□ -0.3
CLK3-206ENST00000562078 MAP3K7CLP57077 242 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 CBLBQ13191 982 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 DGUOKQ16854 277 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 ZFP69Q49AA0 526 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 SAMD4BQ5PRF9 694 aaKnown RBP13.2□□□□□ -0.3
CLK3-206ENST00000562078 PXDC1Q5TGL8 231 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 TBPL2Q6SJ96 375 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 SIMC1Q8NDZ2 872 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 PIK3C3Q8NEB9 887 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 CSPG4P5Q96PW8 444 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 189 ms