RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 FUBP1Q96AE4 644 aaKnown RBP12.78□□□□□ -0.36
SNX1-211ENST00000560829 ELSPBP1Q96BH3 223 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 SLC7A6OSQ96CW6 309 aaPredicted RBP12.78□□□□□ -0.36
SNX1-211ENST00000560829 PHF21BQ96EK2 531 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 PTCD3Q96EY7 689 aaKnown RBP12.78□□□□□ -0.36
SNX1-211ENST00000560829 CCDC97Q96F63 343 aaPredicted RBP12.78□□□□□ -0.36
SNX1-211ENST00000560829 PRR11Q96HE9 360 aaPredicted RBP12.78□□□□□ -0.36
SNX1-211ENST00000560829 ERVK-6Q9BXR3 956 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 LRMDAQ9H2I8 198 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 TMEM245Q9H330 911 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 CYP4F12Q9HCS2 524 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 PCDH12Q9NPG4 1184 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 ACSS2Q9NR19 701 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 LATS2Q9NRM7 1088 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 RAD18Q9NS91 495 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 SMOXQ9NWM0 555 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 KLHL42Q9P2K6 505 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 IKZF3Q9UKT9 509 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 C2orf16Q68DN1 1984 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 C16orf96A6NNT2 1141 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 IQCF5A8MTL0 148 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 CBX6O95503 412 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 PRNPP04156 253 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 PSMC3P17980 439 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 GJA4P35212 333 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 RASSF2P50749 326 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 NAA20P61599 178 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 KDSRQ06136 332 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 TSNQ15631 228 aaKnown RBP12.78□□□□□ -0.36
SNX1-211ENST00000560829 CRY1Q16526 586 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 ATP13A5Q4VNC0 1218 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 C9orf64Q5T6V5 341 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 CES5AQ6NT32 575 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 RFLNAQ6ZTI6 216 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 YAF2Q8IY57 180 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 CPNE9Q8IYJ1 553 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 PTGR2Q8N8N7 351 aaPredicted RBP12.78□□□□□ -0.36
SNX1-211ENST00000560829 MAPK15Q8TD08 544 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 EEF1AKMT1Q8WVE0 214 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 LINGO1Q96FE5 620 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 COPS8Q99627 209 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 CCDC106Q9BWC9 280 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 PLA2G2FQ9BZM2 168 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 ARL8BQ9NVJ2 186 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 LMCD1Q9NZU5 365 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 TMCO1Q9UM00 188 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 PRSS21Q9Y6M0 314 aa12.78□□□□□ -0.36
SNX1-211ENST00000560829 KIF26AQ9ULI4 1882 aaPredicted RBP12.78□□□□□ -0.36
SNX1-211ENST00000560829 ZNF106Q9H2Y7 1883 aaKnown RBP12.77□□□□□ -0.36
SNX1-211ENST00000560829 H0YHG0 523 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 UBXN8O00124 270 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 CDC7O00311 574 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 BTN3A1O00481 513 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 ECI2O75521 394 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 LAMP2P13473 410 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 CALB2P22676 271 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 MMP12P39900 470 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 RALGDSQ12967 914 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 ELAVL3Q14576 367 aaKnown RBP12.77□□□□□ -0.37
SNX1-211ENST00000560829 FNDC3BQ53EP0 1204 aaKnown RBP12.77□□□□□ -0.37
SNX1-211ENST00000560829 UNC50Q53HI1 259 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 LRRC73Q5JTD7 316 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 VWA5B1Q5TIE3 1220 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 RAB44Q7Z6P3 723 aaPredicted RBP12.77□□□□□ -0.37
SNX1-211ENST00000560829 C10orf67Q8IYJ2 551 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 ZNF366Q8N895 744 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 NSL1Q96IY1 281 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 FAR2Q96K12 515 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 ASB2Q96Q27 587 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 C1QTNF3Q9BXJ4 246 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 PPM1HQ9ULR3 514 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 RNF112Q9ULX5 631 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 SCN8AQ9UQD0 1980 aa12.77□□□□□ -0.37
SNX1-211ENST00000560829 MYOFQ9NZM1 2061 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 COL4A3Q01955 1670 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 STX16-NPEPL1H3BU86 382 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 PSMD11O00231 422 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 STX16O14662 325 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 DIAPH2O60879 1101 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 HNRNPLP14866 589 aaKnown RBP eCLIP12.76□□□□□ -0.37
SNX1-211ENST00000560829 NQO1P15559 274 aaKnown RBP12.76□□□□□ -0.37
SNX1-211ENST00000560829 AOC1P19801 751 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 ZNF234Q14588 700 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 SLC9B1Q4ZJI4 515 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 GPRC6AQ5T6X5 926 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 ERAP2Q6P179 960 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 PARS2Q7L3T8 475 aaKnown RBP12.76□□□□□ -0.37
SNX1-211ENST00000560829 HSD11B1LQ7Z5J1 315 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 CUZD1Q86UP6 607 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 CLDN19Q8N6F1 224 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 ST13P5Q8NFI4 369 aaPredicted RBP12.76□□□□□ -0.37
SNX1-211ENST00000560829 UCMAQ8WVF2 138 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 OR8D1Q8WZ84 308 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 CHFRQ96EP1 664 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 MAELQ96JY0 434 aaKnown RBP12.76□□□□□ -0.37
SNX1-211ENST00000560829 RIPOR3Q96MK2 946 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 FAM83DQ9H4H8 585 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 ARMCX1Q9P291 453 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 TMPRSS11EQ9UL52 423 aa12.76□□□□□ -0.37
SNX1-211ENST00000560829 MUC22E2RYF6 1773 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms