RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 MLLT3P42568 568 aaPredicted RBP17.51■□□□□ 0.39
HDDC3-205ENST00000559898 MAPK9P45984 424 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 GPR3P46089 330 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 DCDC1P59894 354 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 HHEXQ03014 270 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 LRP8Q14114 963 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 SLC14A2Q15849 920 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 CCDC81Q6ZN84 652 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 PID1Q7Z2X4 250 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 DAAM2Q86T65 1068 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 RCOR2Q8IZ40 523 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 IPMKQ8NFU5 416 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 SNRNP27Q8WVK2 155 aaKnown RBP17.51■□□□□ 0.39
HDDC3-205ENST00000559898 P3H4Q92791 437 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 CMKLR1Q99788 373 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 UGT1A7Q9HAW7 530 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 UGT1A10Q9HAW8 530 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 UGT1A8Q9HAW9 530 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.51■□□□□ 0.39
HDDC3-205ENST00000559898 TRIM10Q9UDY6 481 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 FAM153AQ9UHL3 310 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 ACSL6Q9UKU0 697 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 DNAJC16Q9Y2G8 782 aa17.51■□□□□ 0.39
HDDC3-205ENST00000559898 EPN1Q9Y6I3 576 aaPredicted RBP17.51■□□□□ 0.39
HDDC3-205ENST00000559898 ZNF106Q9H2Y7 1883 aaKnown RBP17.5■□□□□ 0.39
HDDC3-205ENST00000559898 PRR19A6NJB7 356 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 EIF4E1BA6NMX2 242 aaKnown RBP17.5■□□□□ 0.39
HDDC3-205ENST00000559898 GAPDHSO14556 408 aaPredicted RBP17.5■□□□□ 0.39
HDDC3-205ENST00000559898 CHUKO15111 745 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 AGTP01019 485 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 BRAFP15056 766 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 UCNP55089 124 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 SEPT7Q16181 437 aaKnown RBP17.5■□□□□ 0.39
HDDC3-205ENST00000559898 BBS12Q6ZW61 710 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 CCDC170Q8IYT3 715 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 ZNF843Q8N446 348 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 OR4D9Q8NGE8 314 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 HTR3CQ8WXA8 447 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 ALG3Q92685 438 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 CCDC97Q96F63 343 aaPredicted RBP17.5■□□□□ 0.39
HDDC3-205ENST00000559898 PLEKHG4BQ96PX9 1271 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 FCRL5Q96RD9 977 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 CCNL2Q96S94 520 aaPredicted RBP17.5■□□□□ 0.39
HDDC3-205ENST00000559898 SLC38A3Q99624 504 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 OSGEPL1Q9H4B0 414 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 TRIM39Q9HCM9 518 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 OGFRQ9NZT2 677 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 ZNF624Q9P2J8 865 aaPredicted RBP17.5■□□□□ 0.39
HDDC3-205ENST00000559898 NFKBIL1Q9UBC1 381 aaPredicted RBP17.5■□□□□ 0.39
HDDC3-205ENST00000559898 KCTD3Q9Y597 815 aa17.5■□□□□ 0.39
HDDC3-205ENST00000559898 F3P13726 295 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 CTNNA1P35221 906 aaKnown RBP17.49■□□□□ 0.39
HDDC3-205ENST00000559898 UBE2IP63279 158 aaKnown RBP17.49■□□□□ 0.39
HDDC3-205ENST00000559898 CYP4F2P78329 520 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 OTUD4Q01804 1114 aaKnown RBP17.49■□□□□ 0.39
HDDC3-205ENST00000559898 SQSTM1Q13501 440 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 SPA17Q15506 151 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 SLC1A5Q15758 541 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 CHRNA6Q15825 494 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 C11orf96Q7Z7L8 435 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 DTX1Q86Y01 620 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 TMEM139Q8IV31 216 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 BMPERQ8N8U9 685 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 ACTL9Q8TC94 416 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 BLOC1S5Q8TDH9 187 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 ART4Q93070 314 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 PANX2Q96RD6 677 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 CTRCQ99895 268 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 APOL2Q9BQE5 337 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 ZSCAN5AQ9BUG6 496 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 RMI1Q9H9A7 625 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 IL26Q9NPH9 171 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 IL17CQ9P0M4 197 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 KLHL3Q9UH77 587 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 B3GALT1Q9Y5Z6 326 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 SLC30A1Q9Y6M5 507 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 CFAP46Q8IYW2 2715 aa17.49■□□□□ 0.39
HDDC3-205ENST00000559898 GRID2IPA4D2P6 1211 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 EFCAB7A8K855 629 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 H7C0C1 242 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 ERVH48-1M5A8F1 160 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 ZIC2O95409 532 aaPredicted RBP17.48■□□□□ 0.39
HDDC3-205ENST00000559898 LIPCP11150 499 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 ZNF7P17097 686 aaPredicted RBP17.48■□□□□ 0.39
HDDC3-205ENST00000559898 RPL10P27635 214 aaKnown RBP17.48■□□□□ 0.39
HDDC3-205ENST00000559898 CYLC1P35663 651 aaPredicted RBP17.48■□□□□ 0.39
HDDC3-205ENST00000559898 SLC19A1P41440 591 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 ATP5OP48047 213 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 PPM1FP49593 454 aaPredicted RBP17.48■□□□□ 0.39
HDDC3-205ENST00000559898 CTSCP53634 463 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 DRG2P55039 364 aaKnown RBP17.48■□□□□ 0.39
HDDC3-205ENST00000559898 GFERP55789 205 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 PPP2R5EQ16537 467 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 TAF1BQ53T94 588 aaPredicted RBP17.48■□□□□ 0.39
HDDC3-205ENST00000559898 TMEM71Q6P5X7 295 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 FAM151BQ6UXP7 276 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 NCSTNQ92542 709 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 MRFAP1L1Q96HT8 127 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 FICDQ9BVA6 458 aa17.48■□□□□ 0.39
HDDC3-205ENST00000559898 APMAPQ9HDC9 416 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms