RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 Q75L30 129 aa4.42□□□□□ -1.7
SCFD1-221ENST00000556534 TICAM1Q8IUC6 712 aa4.42□□□□□ -1.7
SCFD1-221ENST00000556534 CIARTQ8N365 385 aaPredicted RBP4.42□□□□□ -1.7
SCFD1-221ENST00000556534 RASGEF1CQ8N431 466 aa4.42□□□□□ -1.7
SCFD1-221ENST00000556534 SLC38A9Q8NBW4 561 aa4.42□□□□□ -1.7
SCFD1-221ENST00000556534 OR8K5Q8NH50 307 aa4.42□□□□□ -1.7
SCFD1-221ENST00000556534 MAF1Q9H063 256 aa4.42□□□□□ -1.7
SCFD1-221ENST00000556534 RAB6CQ9H0N0 254 aa4.42□□□□□ -1.7
SCFD1-221ENST00000556534 PLK3Q9H4B4 646 aa4.42□□□□□ -1.7
SCFD1-221ENST00000556534 BLOC1S4Q9NUP1 217 aa4.42□□□□□ -1.7
SCFD1-221ENST00000556534 POU2F3Q9UKI9 436 aa4.42□□□□□ -1.7
SCFD1-221ENST00000556534 SESN1Q9Y6P5 492 aa4.42□□□□□ -1.7
SCFD1-221ENST00000556534 ZCWPW2A0A1B0GU75 182 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 A0A1W2PS18 150 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 CTAGE9A4FU28 777 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 OR5K3A6NET4 321 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 MYO1GB0I1T2 1018 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 ZNHIT1O43257 154 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 WDR1O75083 606 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 SRPRAP08240 638 aaKnown RBP4.41□□□□□ -1.7
SCFD1-221ENST00000556534 CTAGE8P0CG41 777 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 TMEM11P17152 192 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 KCNA5P22460 613 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 MARK3P27448 753 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 HOXA13P31271 388 aaPredicted RBP4.41□□□□□ -1.7
SCFD1-221ENST00000556534 CAMPP49913 170 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 CDH8P55286 799 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 COG7P83436 770 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 CRYMQ14894 314 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 IRAK1BP1Q5VVH5 260 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 TMEM198Q66K66 360 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 CHST9Q7L1S5 443 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 MAP7D3Q8IWC1 876 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 CTAGE4Q8IX94 777 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 PM20D2Q8IYS1 436 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 MAB21L3Q8N8X9 362 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 DNAAF4Q8WXU2 420 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 PGAM5Q96HS1 289 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 SMC6Q96SB8 1091 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 EIF2B3Q9NR50 452 aaKnown RBP4.41□□□□□ -1.7
SCFD1-221ENST00000556534 OGFRQ9NZT2 677 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 KLHL9Q9P2J3 617 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 FBXL17Q9UF56 701 aa4.41□□□□□ -1.7
SCFD1-221ENST00000556534 CDRT15L2A8MXV6 281 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 TMEM178BH3BS89 294 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 PLPP2O43688 288 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 WISP2O76076 250 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 IGLV2-11P01706 119 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 ACTN1P12814 892 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 IL15P40933 162 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-221ENST00000556534 MVPQ14764 893 aaKnown RBP4.4□□□□□ -1.71
SCFD1-221ENST00000556534 ZSCAN23Q3MJ62 389 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 TMEM35AQ53FP2 167 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 C9orf50Q5SZB4 431 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 RARS2Q5T160 578 aaKnown RBP4.4□□□□□ -1.71
SCFD1-221ENST00000556534 OR7E24Q6IFN5 339 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 MEX3BQ6ZN04 569 aaKnown RBP4.4□□□□□ -1.71
SCFD1-221ENST00000556534 TTC39CQ8N584 583 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 UTP15Q8TED0 518 aaKnown RBP4.4□□□□□ -1.71
SCFD1-221ENST00000556534 TMEM255BQ8WV15 326 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 NODALQ96S42 347 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 GAD1Q99259 594 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 GFI1Q99684 422 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 TREX2Q9BQ50 279 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-221ENST00000556534 NEURL2Q9BR09 285 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 MMP28Q9H239 520 aa4.4□□□□□ -1.71
SCFD1-221ENST00000556534 A0A1W2PR77 199 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 TMEM8BA6NDV4 472 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 AGAP14A8MT82 685 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 C16orf97H3BN30 126 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 EIF3DO15371 548 aaKnown RBP eCLIP4.39□□□□□ -1.71
SCFD1-221ENST00000556534 HS6ST1O60243 411 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 DOK2O60496 412 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 ZBED4O75132 1171 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 TPPPO94811 219 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 HIST1H2ABP04908 130 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 RB1P06400 928 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 CETPP11597 493 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 HIST1H2ADP20671 130 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 PON1P27169 355 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 MSH2P43246 934 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 EEF1A1P68104 462 aaKnown RBP4.39□□□□□ -1.71
SCFD1-221ENST00000556534 PLIN5Q00G26 463 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 IKQ13123 557 aaPredicted RBP4.39□□□□□ -1.71
SCFD1-221ENST00000556534 EEF1A1P5Q5VTE0 462 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 FAM171BQ6P995 826 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 C4orf50Q6ZRC1 276 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 HIST3H2AQ7L7L0 130 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 CCDC190Q86UF4 302 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 ADGRF2Q8IZF7 708 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 OR52I2Q8NH67 350 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 DNASE2BQ8WZ79 361 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 INPP4AQ96PE3 977 aaPredicted RBP4.39□□□□□ -1.71
SCFD1-221ENST00000556534 NCAPGQ9BPX3 1015 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 SRSF8Q9BRL6 282 aaKnown RBP4.39□□□□□ -1.71
SCFD1-221ENST00000556534 FTOQ9C0B1 505 aaKnown RBP eCLIP4.39□□□□□ -1.71
SCFD1-221ENST00000556534 TMEM39BQ9GZU3 492 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 SDF2L1Q9HCN8 221 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 TCF7L2Q9NQB0 619 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 ZFP57Q9NU63 452 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms