RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 KCNN4O15554 427 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 F3P13726 295 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 CD1CP29017 333 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 SPAM1P38567 509 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 TLE3Q04726 772 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 TRA2AQ13595 282 aaKnown RBP eCLIP15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 PRPSAP1Q14558 356 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 ATP13A5Q4VNC0 1218 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 AADACL2Q6P093 401 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 IYDQ6PHW0 289 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 DARS2Q6PI48 645 aaKnown RBP15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 RAB11FIP2Q7L804 512 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 GLT6D1Q7Z4J2 308 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 PIM3Q86V86 326 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 Q8N9G6 341 aaPredicted RBP15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 DDHD1Q8NEL9 900 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 SLC35B2Q8TB61 432 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 BRSK1Q8TDC3 778 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 PATE1Q8WXA2 126 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 FRMD8P1Q9BZ68 369 aaPredicted RBP15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 OR2AG1Q9H205 316 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 SYNDIG1Q9H7V2 258 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 UCK1Q9HA47 277 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 PDP2Q9P2J9 529 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 TBC1D29Q9UFV1 150 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 PKP3Q9Y446 797 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 IGSF10Q6WRI0 2623 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 UNC13CQ8NB66 2214 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 IGHV1OR21-1A0A087WYE8 117 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 A0A0U1RQJ8 604 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 GAPDHSO14556 408 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 KMOO15229 486 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 KRT86O43790 486 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 KCNJ13O60928 360 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 EML2O95834 649 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 FTCDO95954 541 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 SLC4A1P02730 911 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 ACP5P13686 325 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 PSMB4P28070 264 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 UGT1A5P35504 534 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 EPHA4P54764 986 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 UCNP55089 124 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 MSLNQ13421 630 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 ITGA9Q13797 1035 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 TAF1AQ15573 450 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 MAP9Q49MG5 647 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 C19orf48Q6RUI8 117 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 WASH2PQ6VEQ5 465 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 CHST15Q7LFX5 561 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 TMPRSS9Q7Z410 1059 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 PDZD3Q86UT5 571 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 LRRTM4Q86VH4 590 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 ZNF547Q8IVP9 402 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 SPACA3Q8IXA5 215 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 FBXO39Q8N4B4 442 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 SLC25A41Q8N5S1 370 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 OR4D9Q8NGE8 314 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 HNRNPLLQ8WVV9 542 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 SH3KBP1Q96B97 665 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 RTP4Q96DX8 246 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 DCBLD2Q96PD2 775 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 FOXP3Q9BZS1 431 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 ZCCHC2Q9C0B9 1178 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 EPB41L1Q9H4G0 881 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 PRORYQ9H606 182 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 STN1Q9H668 368 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 EPB41L5Q9HCM4 733 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 WASH6PQ9NQA3 447 aa15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 ATXN7L1Q9ULK2 861 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-209ENST00000554872 GLYATL1P3A0A0U1RQE8 302 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 NVLO15381 856 aaKnown RBP15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 TNFSF15O95150 251 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 ITPKBP27987 946 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 LIMK2P53671 638 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 OR1D5P58170 312 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 UBE2IP63279 158 aaKnown RBP15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 PDE1BQ01064 536 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 HHEXQ03014 270 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 DMPKQ09013 629 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 BIRC2Q13490 618 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 PARP6Q2NL67 630 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 KHDC1Q4VXA5 237 aaKnown RBP15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 LDLRAP1Q5SW96 308 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 AGAP9Q5VTM2 703 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 KCTD11Q693B1 232 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 CCDC110Q8TBZ0 833 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 BLOC1S5Q8TDH9 187 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 SNRNP27Q8WVK2 155 aaKnown RBP15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 LRRC45Q96CN5 670 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 CMKLR1Q99788 373 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 FICDQ9BVA6 458 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 C10orf88Q9H8K7 445 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 PACSIN2Q9UNF0 486 aaPredicted RBP15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 KCNK6Q9Y257 313 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 PRKAB1Q9Y478 270 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 KIF26BQ2KJY2 2108 aa15.83■□□□□ 0.12
CCDC88C-209ENST00000554872 PMS2P1A4D2B8 440 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 KLHL33A6NCF5 533 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 LILRA5A6NI73 299 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 C2orf81A6NN90 581 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms