RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 WDR24Q96S15 920 aa11.73□□□□□ -0.53
CKAP4-202ENST00000552828 RIOK2Q9BVS4 552 aaKnown RBP11.73□□□□□ -0.53
CKAP4-202ENST00000552828 MAK16Q9BXY0 300 aaKnown RBP11.73□□□□□ -0.53
CKAP4-202ENST00000552828 TSGA10Q9BZW7 698 aa11.73□□□□□ -0.53
CKAP4-202ENST00000552828 POLR1EQ9GZS1 481 aaKnown RBP11.73□□□□□ -0.53
CKAP4-202ENST00000552828 TRIT1Q9H3H1 467 aaKnown RBP11.73□□□□□ -0.53
CKAP4-202ENST00000552828 GOLPH3Q9H4A6 298 aa11.73□□□□□ -0.53
CKAP4-202ENST00000552828 EPB41L1Q9H4G0 881 aa11.73□□□□□ -0.53
CKAP4-202ENST00000552828 RMI1Q9H9A7 625 aa11.73□□□□□ -0.53
CKAP4-202ENST00000552828 GPN2Q9H9Y4 310 aaPredicted RBP11.73□□□□□ -0.53
CKAP4-202ENST00000552828 TBC1D29Q9UFV1 150 aa11.73□□□□□ -0.53
CKAP4-202ENST00000552828 AMACRQ9UHK6 382 aa11.73□□□□□ -0.53
CKAP4-202ENST00000552828 RPL26L1Q9UNX3 145 aaKnown RBP11.73□□□□□ -0.53
CKAP4-202ENST00000552828 ADGRG1Q9Y653 693 aa11.73□□□□□ -0.53
CKAP4-202ENST00000552828 NBPF19A0A087WUL8 3843 aa11.73□□□□□ -0.53
CKAP4-202ENST00000552828 TEX15Q9BXT5 2789 aa11.73□□□□□ -0.53
CKAP4-202ENST00000552828 TRBV23OR9-2A0A075B6M9 112 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 LOC101059948A0A1B0GTJ6 334 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 MACROD2A1Z1Q3 448 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 RGSL1A5PLK6 1076 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 ZNF487B1APH4 448 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 DLGAP3O95886 979 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 KRT1P04264 644 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 ANKRD34CP0C6C1 535 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 GARSP41250 739 aaKnown RBP11.72□□□□□ -0.53
CKAP4-202ENST00000552828 GALNT2Q10471 571 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 UBAP2LQ14157 1087 aaKnown RBP11.72□□□□□ -0.53
CKAP4-202ENST00000552828 MAP7Q14244 749 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 SKIDA1Q1XH10 827 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 LYSMD3Q7Z3D4 306 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 RNF10Q8N5U6 811 aaKnown RBP11.72□□□□□ -0.53
CKAP4-202ENST00000552828 ARRDC2Q8TBH0 407 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.72□□□□□ -0.53
CKAP4-202ENST00000552828 KIAA1143Q96AT1 154 aaPredicted RBP11.72□□□□□ -0.53
CKAP4-202ENST00000552828 FAF2Q96CS3 445 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 TSGA13Q96PP4 275 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 RNF157Q96PX1 679 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 HERPUD2Q9BSE4 406 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 TDRD1Q9BXT4 1180 aaKnown RBP11.72□□□□□ -0.53
CKAP4-202ENST00000552828 RRAGDQ9NQL2 400 aaPredicted RBP11.72□□□□□ -0.53
CKAP4-202ENST00000552828 ZNHIT2Q9UHR6 403 aa11.72□□□□□ -0.53
CKAP4-202ENST00000552828 OAS3Q9Y6K5 1087 aaKnown RBP11.72□□□□□ -0.53
CKAP4-202ENST00000552828 USP9XQ93008 2570 aaPredicted RBP11.72□□□□□ -0.53
CKAP4-202ENST00000552828 NBASA2RRP1 2371 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 KIR2DS5A0A0G2JLQ3 304 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 A0A0G2JNG1 304 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 OR5K4A6NMS3 321 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 A8MU76 341 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 KIR2DS3K7RE56 304 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 MATN3O15232 486 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 INPP4BO15327 924 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 KRT86O43790 486 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 STK17BO94768 372 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 ZRANB2O95218 330 aaKnown RBP eCLIP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 CLDN7O95471 211 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 ASMTLO95671 621 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 ATP1A1P05023 1023 aaKnown RBP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 CCDC175P0C221 793 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 F3P13726 295 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 SLC2A4P14672 509 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 CCNCP24863 283 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 SPINT3P49223 89 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 CLCNKAP51800 687 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 CCZ1BP86790 482 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 CCZ1P86791 482 aaPredicted RBP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 MC1RQ01726 317 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 ITKQ08881 620 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 CDC20Q12834 499 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 NFATC2Q13469 925 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 KIR2DS5Q14953 304 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 PAFAH1B3Q15102 231 aaKnown RBP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 SNAP47Q5SQN1 464 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 HENMT1Q5T8I9 393 aaKnown RBP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 CHST15Q7LFX5 561 aaPredicted RBP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 SLC9B2Q86UD5 537 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 KATNAL2Q8IYT4 538 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 RCOR2Q8IZ40 523 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 SYCE1Q8N0S2 351 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 PQLC3Q8N755 202 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 AVL9Q8NBF6 648 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 C9orf43Q8TAL5 461 aaPredicted RBP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 APOBEC4Q8WW27 367 aaKnown RBP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 NCSTNQ92542 709 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 RNF25Q96BH1 459 aaPredicted RBP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 CTRCQ99895 268 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 STN1Q9H668 368 aaKnown RBP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 UCK1Q9HA47 277 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 APMAPQ9HDC9 416 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 SIDT1Q9NXL6 827 aaKnown RBP11.71□□□□□ -0.53
CKAP4-202ENST00000552828 ANKMY1Q9P2S6 941 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 TRIM10Q9UDY6 481 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 CHKBQ9Y259 395 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 PRKAB1Q9Y478 270 aa11.71□□□□□ -0.53
CKAP4-202ENST00000552828 UTP20O75691 2785 aaKnown RBP11.7□□□□□ -0.54
CKAP4-202ENST00000552828 MN1Q10571 1320 aaPredicted RBP11.7□□□□□ -0.54
CKAP4-202ENST00000552828 A0A0U1RQJ8 604 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 GRID2IPA4D2P6 1211 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 LILRA5A6NI73 299 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 C3orf70A6NLC5 250 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms