RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	MTHFR	P42898	656 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	RASSF2	P50749	326 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	CCR3	P51677	355 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	SLC12A3	P55017	1021 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	F2RL1	P55085	397 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	TPD52	P55327	224 aa	Predicted RBP	4.7	□□□□□ -1.66
ATM-223	ENST00000533979	UBASH3A	P57075	661 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	TUBB4B	P68371	445 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	PPAT	Q06203	517 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	IK	Q13123	557 aa	Predicted RBP	4.7	□□□□□ -1.66
ATM-223	ENST00000533979	ITGA7	Q13683	1181 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	TNIP1	Q15025	636 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	ALG11	Q2TAA5	492 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	FBXO43	Q4G163	708 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	TXNDC8	Q6A555	127 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	CFAP77	Q6ZQR2	320 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	LINC00696	Q6ZRV3	163 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	LURAP1L	Q8IV03	231 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	IQCF1	Q8N6M8	205 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	PI4KAP1	Q8N8J0	262 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	TC2N	Q8N9U0	490 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	SPATA20	Q8TB22	786 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	CORO2A	Q92828	525 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	KAT2A	Q92830	837 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	PDLIM5	Q96HC4	596 aa	Known RBP	4.7	□□□□□ -1.66
ATM-223	ENST00000533979	ADAD1	Q96M93	576 aa	Known RBP	4.7	□□□□□ -1.66
ATM-223	ENST00000533979	OR2A14	Q96R47	310 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	GAD1	Q99259	594 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	MLPH	Q9BV36	600 aa	Predicted RBP	4.7	□□□□□ -1.66
ATM-223	ENST00000533979	ISCU	Q9H1K1	167 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	HRH4	Q9H3N8	390 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	PLK3	Q9H4B4	646 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	PDZD7	Q9H5P4	517 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	MRPL44	Q9H9J2	332 aa	Known RBP	4.7	□□□□□ -1.66
ATM-223	ENST00000533979	SETD4	Q9NVD3	440 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	INTS10	Q9NVR2	710 aa	Known RBP	4.7	□□□□□ -1.66
ATM-223	ENST00000533979	HIF1AN	Q9NWT6	349 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	ARHGEF38	Q9NXL2	777 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	PSD3	Q9NYI0	1048 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	SLC25A13	Q9UJS0	675 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	RNF17	Q9BXT8	1623 aa	Known RBP	4.7	□□□□□ -1.66
ATM-223	ENST00000533979	BLM	P54132	1417 aa	Predicted RBP	4.7	□□□□□ -1.66
ATM-223	ENST00000533979	CNTLN	Q9NXG0	1405 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	ZNF644	Q9H582	1327 aa	Predicted RBP	4.7	□□□□□ -1.66
ATM-223	ENST00000533979	FRMPD1	Q5SYB0	1578 aa		4.7	□□□□□ -1.66
ATM-223	ENST00000533979	ABCA9	Q8IUA7	1624 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	ALK	Q9UM73	1620 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	RPS10-NUDT3	A0A1W2PQS6	291 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	KRT87P	A6NCN2	255 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	MCIDAS	D6RGH6	385 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	ZNF263	O14978	683 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	PGRMC2	O15173	223 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	HCRTR2	O43614	444 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	AVIL	O75366	819 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	SLCO2B1	O94956	709 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	SIX3	O95343	332 aa	Predicted RBP	4.69	□□□□□ -1.66
ATM-223	ENST00000533979	DDAH2	O95865	285 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	CAST	P20810	708 aa	Known RBP	4.69	□□□□□ -1.66
ATM-223	ENST00000533979	AGA	P20933	346 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	POU1F1	P28069	291 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	ARRB2	P32121	409 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	SLC16A2	P36021	539 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	GNAQ	P50148	359 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	STARD6	P59095	220 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	POLR2F	P61218	127 aa	Known RBP	4.69	□□□□□ -1.66
ATM-223	ENST00000533979	CYP4A11	Q02928	519 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	PMPCA	Q10713	525 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	RPA4	Q13156	261 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	CBX3	Q13185	183 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	OLIG2	Q13516	323 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	RUNX2	Q13950	521 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	LETM2	Q2VYF4	491 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	ZSCAN23	Q3MJ62	389 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	SERTAD4-AS1	Q5TG53	156 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	VWA5B1	Q5TIE3	1220 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	PARM1	Q6UWI2	310 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	MSANTD1	Q6ZTZ1	278 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	GSTA5	Q7RTV2	222 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	RNF144B	Q7Z419	303 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	MDGA2	Q7Z553	956 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	DSG4	Q86SJ6	1040 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	FAM160B2	Q86V87	743 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	SYCP3	Q8IZU3	236 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	SIX6OS1	Q8N1H7	587 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	INPP5D	Q92835	1189 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	RUNDC3B	Q96NL0	473 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	MGME1	Q9BQP7	344 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	H2AFJ	Q9BTM1	129 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	RBM38	Q9H0Z9	239 aa	Known RBP	4.69	□□□□□ -1.66
ATM-223	ENST00000533979	IL1RAPL2	Q9NP60	686 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	ASAH2	Q9NR71	780 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	SLC6A13	Q9NSD5	602 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	PLK2	Q9NYY3	685 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	UPB1	Q9UBR1	384 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	PCDHA7	Q9UN72	937 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	RABL2B	Q9UNT1	228 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	NPAT	Q14207	1427 aa		4.69	□□□□□ -1.66
ATM-223	ENST00000533979	C3	P01024	1663 aa		4.68	□□□□□ -1.66
ATM-223	ENST00000533979	LRRD1	A4D1F6	860 aa		4.68	□□□□□ -1.66
ATM-223	ENST00000533979	USP17L23	D6RBM5	183 aa		4.68	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 68 ms