RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 NCAPD2Q15021 1401 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LOC102723996A0A087X1L8 192 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARPC4-TTLL3A0A0A6YYG9 625 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C15orf38-AP3S2A0A0A6YYH1 394 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 IGLV5-39A0A0G2JS06 123 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM237AA0A1B0GTK4 181 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C13orf42A0A1B0GVH6 325 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 A0A1B0GVM2 712 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM230AA0A1W2PPH8 454 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 A0A1W2PQF6 199 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TCRBV7S2A1N4TA0A589 114 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ELOVL7A1L3X0 281 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 XKRY2A2RUG3 117 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTAGE15A4D2H0 777 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM149AA5PLN7 773 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDHR4A6H8M9 788 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM247A6NEH6 219 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAGE12JA6NER3 117 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C5orf52A6NGY3 159 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARHGAP42A6NI28 874 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AGAP5A6NIR3 686 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 YDJCA8MPS7 323 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAGEB17A8MXT2 336 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KDM4EB2RXH2 506 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 B4DGG1 531 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 E9PBE3 544 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 E9PI62 339 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM72CH0Y354 149 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NDUFS8O00217 210 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GRM8O00222 908 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LEFTY2O00292 366 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 VWA5AO00534 786 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EBAG9O00559 213 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 E2F3O00716 465 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MEIS2O14770 477 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PER2O15055 1255 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DCLK1O15075 740 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TO15178 435 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CASC3O15234 703 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLIC2O15247 247 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 POLR3GO15318 223 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTAGE5O15320 804 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EIF3DO15371 548 aaKnown RBP eCLIP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TEX28O15482 410 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NKX2-8O15522 239 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PAPSS1O43252 624 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SEC14L5O43304 696 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 BUB1O43683 1085 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LIASO43766 372 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NUDT21O43809 227 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 STRNO43815 780 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 VEGFDO43915 354 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GMFGO60234 142 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CEP104O60308 925 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CACNG3O60359 315 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HBP1O60381 514 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LPXNO60711 386 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYTIPO60759 359 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DIAPH2O60879 1101 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TACC1O75410 805 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF821O75541 412 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTRF1O75570 445 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KRTAP5-8O75690 187 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAD51DO75771 328 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AKAP3O75969 853 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RHOBTB1O94844 696 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SEC31AO94979 1220 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR6B1O95007 311 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AGFG2O95081 481 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MFN2O95140 757 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EPN2O95208 641 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCNK5O95279 499 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MOCS3O95396 460 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C22orf31O95567 290 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 YEATS4O95619 227 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DIRAS3O95661 229 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDAH2O95865 285 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRUB2O95900 331 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLGP00747 810 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MT-ATP6P00846 226 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PENKP01210 267 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 IFNB1P01574 187 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 IGKV3-20P01619 116 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HLA-DQA2P01906 255 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GBAP04062 536 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ALDOAP04075 364 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KRT6BP04259 564 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RLN1P04808 185 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HIST1H2ABP04908 130 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SERPINB2P05120 415 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ALPPP05187 535 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LCKP06239 509 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ENO1P06733 434 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HEXAP06865 529 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PGK2P07205 417 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CSF1RP07333 972 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GALTP07902 379 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 INHBAP08476 426 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYP21A2P08686 494 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms