RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 OTUD4Q01804 1114 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 INPP5AQ14642 412 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 C16orf72Q14CZ0 275 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 CASC4Q6P4E1 433 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 Q6ZSR6 202 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 PATL1Q86TB9 770 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ANKMY2Q8IV38 441 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 TMEM151BQ8IW70 566 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 RHOT2Q8IXI1 618 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ZNF687Q8N1G0 1237 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 DNAAF3Q8N9W5 541 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ACTL9Q8TC94 416 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 DTX3LQ8TDB6 740 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 COG1Q8WTW3 980 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ALG3Q92685 438 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 PPP1R16AQ96I34 528 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 SEC16BQ96JE7 1060 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ELAC2Q9BQ52 826 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 MAGEH1Q9H213 219 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 MBNL1Q9NR56 388 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 FARSBQ9NSD9 589 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 DCAF16Q9NXF7 216 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 REXO2Q9Y3B8 237 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 PKD1L2Q7Z442 2459 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 GOLGA8QA0A0J9YX86 632 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 B4DGG1 531 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 K7ESM1 405 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 KRT86O43790 486 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 POP4O95707 220 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 ALDH4A1P30038 563 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 KCNJ2P63252 427 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 DR1Q01658 176 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 C2orf54Q08AI8 447 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 CSTF3Q12996 717 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 SPRED3Q2MJR0 410 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 FIGNQ5HY92 759 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 LAIR1Q6GTX8 287 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 DUS1LQ6P1R4 473 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 USP53Q70EK8 1073 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 CCDC197Q8NCU1 140 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 NUDCD1Q96RS6 583 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 SUV39H2Q9H5I1 410 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 FAM96AQ9H5X1 160 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 TRIM39Q9HCM9 518 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 ITM2CQ9NQX7 267 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 TRNAU1APQ9NX07 287 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 ZNHIT2Q9UHR6 403 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 TBC1D30Q9Y2I9 924 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 RAI2Q9Y5P3 530 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 WASF2Q9Y6W5 498 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 PATJQ8NI35 1801 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 TAF4O00268 1085 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 CLDN7O95471 211 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 ZSCAN5DPP0CG00 497 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 CD53P19397 219 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 VARSP26640 1264 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 CD38P28907 300 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 NBL1P41271 181 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 ARFIP2P53365 341 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 EIF3EP60228 445 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 CRADDP78560 199 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 SLC25A11Q02978 314 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 UGP2Q16851 508 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 CNPY1Q3B7I2 92 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 C6orf163Q5TEZ5 329 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 VASH1Q7L8A9 365 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 CHST15Q7LFX5 561 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 ZBTB46Q86UZ6 589 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 TPCN2Q8NHX9 752 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 SKA2Q8WVK7 121 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 FOXJ1Q92949 421 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 NT5C3BQ969T7 300 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 VCPIP1Q96JH7 1222 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 HERPUD2Q9BSE4 406 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 SLC17A9Q9BYT1 436 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 EDEM3Q9BZQ6 932 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 PABPC3Q9H361 631 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 TMEM248Q9NWD8 314 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 DTLQ9NZJ0 730 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 UVRAGQ9P2Y5 699 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 B4GALT6Q9UBX8 382 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 CFAP20Q9Y6A4 193 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 NOTCH2Q04721 2471 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 SSU72P8A0A1W2PR75 194 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 HLA-DQB2P05538 268 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 ZNF16P17020 682 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 ITGB6P18564 788 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 CCNCP24863 283 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 RPL10P27635 214 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 AFF3P51826 1226 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 DSTNP60981 165 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 CAMK2GQ13555 558 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 NCBP2-AS2Q69YL0 99 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 PPP1R21Q6ZMI0 780 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 ZSWIM9Q86XI8 627 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 LRRC49Q8IUZ0 686 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 KLHL7Q8IXQ5 586 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 PELI3Q8N2H9 469 aa7.85□□□□□ -1.15
LIMCH1-219ENST00000514096 PLA2G15Q8NCC3 412 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms