RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 ZNF419Q96HQ0 510 aaPredicted RBP3.9□□□□□ -1.78
NEDD4-209ENST00000508871 NAF1Q96HR8 494 aaKnown RBP3.9□□□□□ -1.78
NEDD4-209ENST00000508871 CCNL2Q96S94 520 aaPredicted RBP3.9□□□□□ -1.78
NEDD4-209ENST00000508871 MED10Q9BTT4 135 aa3.9□□□□□ -1.78
NEDD4-209ENST00000508871 ZMYND12Q9H0C1 365 aa3.9□□□□□ -1.78
NEDD4-209ENST00000508871 EPB41L1Q9H4G0 881 aa3.9□□□□□ -1.78
NEDD4-209ENST00000508871 SMPD4Q9NXE4 827 aa3.9□□□□□ -1.78
NEDD4-209ENST00000508871 MBD2Q9UBB5 411 aa3.9□□□□□ -1.78
NEDD4-209ENST00000508871 GRID1Q9ULK0 1009 aa3.9□□□□□ -1.78
NEDD4-209ENST00000508871 A0A0G2JLW4 131 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 LOC100653049A0A140TA62 436 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 LRRC37A2A6NM11 1700 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 TMEM233B4DJY2 109 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 K7EQM0 130 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ABCD4O14678 606 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 GRM6O15303 877 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 KRT34O76011 436 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 HAUS5O94927 633 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ALOX5P09917 674 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 PRDX5P30044 214 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 FHITP49789 147 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 MLLT6P55198 1093 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 PSMC6P62333 389 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 SNTB1Q13884 538 aaKnown RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 SLC9B1Q4ZJI4 515 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 PHYHD1Q5SRE7 291 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 FNBP1LQ5T0N5 605 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 UBXN11Q5T124 520 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 RAET1LQ5VY80 246 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 LIPMQ5VYY2 423 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 UGT3A1Q6NUS8 523 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 SERPINA13PQ6UXR4 307 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 KDM7AQ6ZMT4 941 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 CYFIP1Q7L576 1253 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 CXorf67Q86X51 503 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 MCATQ8IVS2 390 aaKnown RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 SMYD4Q8IYR2 804 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 SLC24A4Q8NFF2 622 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 OR6C4Q8NGE1 309 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 SDR42E1Q8WUS8 393 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ACOT11Q8WXI4 607 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ALG3Q92685 438 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ZNF607Q96SK3 696 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 NFKBIZQ9BYH8 718 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 WNT10AQ9GZT5 417 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 NAT10Q9H0A0 1025 aaKnown RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 CHRDQ9H2X0 955 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 SNX15Q9NRS6 342 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 KLHL28Q9NXS3 571 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 MAU2Q9Y6X3 613 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 OTOFQ9HC10 1997 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 A0A087WZY1 265 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ALPIP09923 528 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 TMEM191BP0C7N4 346 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 TSHRP16473 764 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 UGT1A6P19224 532 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 PXNP49023 591 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ZNF41P51814 821 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ATP12AP54707 1039 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 NPEPPSP55786 919 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 KCNQ4P56696 695 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ARL13AQ5H913 290 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 SFRP5Q5T4F7 317 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 BSPRYQ5W0U4 402 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ANKFN1Q8N957 763 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 CLHC1Q8NHS4 586 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 GANCQ8TET4 914 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 GDPD5Q8WTR4 605 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 BCL2L2Q92843 193 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 TNFRSF25Q93038 417 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 OTUD5Q96G74 571 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 FAR2Q96K12 515 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 FER1L6-AS2Q96M78 137 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 INPP4AQ96PE3 977 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 IL21Q9HBE4 155 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 TRPC7Q9HCX4 862 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 TMEM51Q9NW97 253 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 PIM2Q9P1W9 311 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 NYAP2Q9P242 653 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 CRNNQ9UBG3 495 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 DYRK1BQ9Y463 629 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.9□□□□□ -1.793e-7■■■■■ 29.4
NEDD4-209ENST00000508871 A0A088AWK7 358 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 WTIPA6NIX2 430 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 E7ENQ6 273 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 H0YIV9 168 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 PPEF2O14830 753 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 FRS3O43559 492 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ATP6V1G2O95670 118 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 DLGAP3O95886 979 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 DBTP11182 482 aaKnown RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 BMP3P12645 472 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 GLB1P16278 677 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 POU3F3P20264 500 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ITGALP20701 1170 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 ZNF10P21506 573 aaPredicted RBP3.9□□□□□ -1.79
NEDD4-209ENST00000508871 BMP6P22004 513 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 FOXO1Q12778 655 aa3.9□□□□□ -1.79
NEDD4-209ENST00000508871 SGCGQ13326 291 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms