RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CCNI2Q6ZMN8 369 aaPredicted RBP4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 TPRG1Q6ZUI0 275 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 GLCCI1Q86VQ1 547 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 TICAM2Q86XR7 235 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 ADHFE1Q8IWW8 467 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZNF34Q8IZ26 560 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 IQCF1Q8N6M8 205 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 POMGNT2Q8NAT1 580 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 KCTD6Q8NC69 237 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 ELP5Q8TE02 316 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 TMED6Q8WW62 240 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 TANKQ92844 425 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 TMCO6Q96DC7 493 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 SCMH1Q96GD3 660 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 QRFPRQ96P65 431 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 RTN4RQ9BZR6 473 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 RAD21L1Q9H4I0 556 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 OCIAD1Q9NX40 245 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 TRMT1Q9NXH9 659 aaKnown RBP4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 TAB2Q9NYJ8 693 aa4.01□□□□□ -1.77
HMGB1P28-201ENST00000507778 LOC102723996A0A087X1L8 192 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 hCG_1809904A0A1W2PP81 198 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 A0A1W2PPE2 198 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 A0A1W2PR64 198 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 CLEC18AA5D8T8 446 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 TMEM8BA6NDV4 472 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 A6NL46 340 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 INO80B-WBP1J3KQ70 363 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 ACAA1P09110 424 aaPredicted RBP4□□□□□ -1.77
HMGB1P28-201ENST00000507778 PRLRP16471 622 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZNF12P17014 697 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 HRH2P25021 359 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 CDKN2AP42771 156 aaKnown RBP4□□□□□ -1.77
HMGB1P28-201ENST00000507778 PPP2R2BQ00005 443 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 AIMP1Q12904 312 aaKnown RBP4□□□□□ -1.77
HMGB1P28-201ENST00000507778 MYBPHQ13203 477 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 KRT33BQ14525 404 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 MVPQ14764 893 aaKnown RBP4□□□□□ -1.77
HMGB1P28-201ENST00000507778 NFATC4Q14934 902 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 MEP1AQ16819 746 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 SYT16Q17RD7 645 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 CEP97Q8IW35 865 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 POGLUT1Q8NBL1 392 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 SLC38A9Q8NBW4 561 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZNF114Q8NC26 417 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 CLEC18CQ8NCF0 446 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 CCDC191Q8NCU4 936 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 THAP6Q8TBB0 222 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 UTP15Q8TED0 518 aaKnown RBP4□□□□□ -1.77
HMGB1P28-201ENST00000507778 PTPMT1Q8WUK0 201 aaPredicted RBP4□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZNF622Q969S3 477 aaKnown RBP eCLIP4□□□□□ -1.77
HMGB1P28-201ENST00000507778 SMC6Q96SB8 1091 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 CDRT15Q96T59 188 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 DDOQ99489 341 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 TMEM204Q9BSN7 226 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 MMP27Q9H306 513 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 CHMP1AQ9HD42 196 aaPredicted RBP4□□□□□ -1.77
HMGB1P28-201ENST00000507778 SMARCAL1Q9NZC9 954 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 C1RLQ9NZP8 487 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 NFKBIL1Q9UBC1 381 aaPredicted RBP4□□□□□ -1.77
HMGB1P28-201ENST00000507778 HACL1Q9UJ83 578 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZNF148Q9UQR1 794 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 TMEM184BQ9Y519 407 aaPredicted RBP4□□□□□ -1.77
HMGB1P28-201ENST00000507778 PCDHGA5Q9Y5G8 931 aa4□□□□□ -1.77
HMGB1P28-201ENST00000507778 GPR75-ASB3A0A0A6YYF3 556 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 J3QR06 171 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZBTB43O43298 467 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZNF217O75362 1048 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 KDM4BO94953 1096 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 ALPLP05186 524 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 ABCB1P08183 1280 aaPredicted RBP3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 FCGR1AP12314 374 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 MATR3P43243 847 aaKnown RBP eCLIP3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 CLDN20P56880 219 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 SEC61A1P61619 476 aaKnown RBP3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 KRTCAP3Q53RY4 240 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZDHHC20Q5W0Z9 365 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 ADALQ6DHV7 355 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 DHRS7BQ6IAN0 325 aaPredicted RBP3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 RPUSD3Q6P087 351 aaKnown RBP3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 INTS8Q75QN2 995 aaKnown RBP3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 MAP7D3Q8IWC1 876 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 RNF113BQ8IZP6 322 aaKnown RBP3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 GUF1Q8N442 669 aaKnown RBP3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 SLC5A8Q8N695 610 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 ACVR1CQ8NER5 493 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 PTERQ96BW5 349 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 HGH1Q9BTY7 390 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 SPATC1LQ9H0A9 340 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 KCNK15Q9H427 330 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 DENND2DQ9H6A0 471 aaPredicted RBP3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZNF224Q9NZL3 707 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 CFDP1Q9UEE9 299 aaPredicted RBP3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 AMACRQ9UHK6 382 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 SIX4Q9UIU6 781 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 TSPYL4Q9UJ04 414 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 PADI3Q9ULW8 664 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 AMDHD2Q9Y303 409 aa3.99□□□□□ -1.77
HMGB1P28-201ENST00000507778 PTPRCP08575 1304 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 CLGNO14967 610 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms