RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 DENND1CQ8IV53 801 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 FAM114A1Q8IWE2 563 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 MCEMP1Q8IX19 187 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 SYT2Q8N9I0 419 aaPredicted RBP4.08□□□□□ -1.76
USP54-217ENST00000498213 TMEM161BQ8NDZ6 487 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 PIGOQ8TEQ8 1089 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 OSCP1Q8WVF1 389 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 C8orf76Q96K31 380 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 SPATA17Q96L03 361 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 PTDSS2Q9BVG9 487 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 GPR174Q9BXC1 333 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 LRRC27Q9C0I9 530 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 DNAI2Q9GZS0 605 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 ZCWPW1Q9H0M4 648 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 CXCL16Q9H2A7 254 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 RPF1Q9H9Y2 349 aaKnown RBP4.08□□□□□ -1.76
USP54-217ENST00000498213 POLR1BQ9H9Y6 1135 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 GLOD4Q9HC38 313 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 SERTAD4Q9NUC0 356 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 ANAPC2Q9UJX6 822 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 PNMA8BQ9ULN7 279 aaPredicted RBP4.08□□□□□ -1.76
USP54-217ENST00000498213 ARHGAP26Q9UNA1 814 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 KCNJ14Q9UNX9 436 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 GDAQ9Y2T3 454 aa4.08□□□□□ -1.76
USP54-217ENST00000498213 TDRD15B5MCY1 1934 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 TRAV19A0A0A6YYK7 116 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 MTMR11A4FU01 709 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 MYMKA6NI61 221 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 BTBD18B2RXH4 712 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 HNRNPDLO14979 420 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 ADAMTS3O15072 1205 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 SYNCRIPO60506 623 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 CTDNEP1O95476 244 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 ONECUT2O95948 504 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 ERBB2P04626 1255 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 PDGFRBP09619 1106 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 HAPLN1P10915 354 aaPredicted RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 FDPSP14324 419 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 RBMS1P29558 406 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 PPIFP30405 207 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 OPRD1P41143 372 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 TNFSF9P41273 254 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 TAF6P49848 677 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 LIG4P49917 911 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 TOB1P50616 345 aaPredicted RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 ZNF134P52741 427 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 PEX3P56589 373 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 EEFSECP57772 596 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 GTF2BQ00403 316 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 MYL7Q01449 175 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 BOP1Q14137 746 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 FGL2Q14314 439 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 LLGL1Q15334 1064 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 C3orf38Q5JPI3 329 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 DCAF12L1Q5VU92 463 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 CAPRIN2Q6IMN6 1127 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 RGS7BPQ6MZT1 257 aaPredicted RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 ANKRD16Q6P6B7 361 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 FAM109AQ8N4B1 249 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.07□□□□□ -1.76
USP54-217ENST00000498213 MAB21L3Q8N8X9 362 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 TMEM174Q8WUU8 243 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 JPH3Q8WXH2 748 aaPredicted RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 DNASE2BQ8WZ79 361 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 USP13Q92995 863 aaPredicted RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 GJA10Q969M2 543 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 CALML4Q96GE6 196 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 ZMAT2Q96NC0 199 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 PGLYRP2Q96PD5 576 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 LINC00597Q9H2U6 94 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 PARVGQ9HBI0 331 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 PIH1D1Q9NWS0 290 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 DUS2Q9NX74 493 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 GDAP2Q9NXN4 497 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 DDX56Q9NY93 547 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 CGNQ9P2M7 1197 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 CPSF3Q9UKF6 684 aaKnown RBP4.07□□□□□ -1.76
USP54-217ENST00000498213 ADAM21Q9UKJ8 722 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 ITGA11Q9UKX5 1188 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 VPS4AQ9UN37 437 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 JMJD1CQ15652 2540 aa4.07□□□□□ -1.76
USP54-217ENST00000498213 CSPG4Q6UVK1 2322 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 ZFC3H1O60293 1989 aaKnown RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 A0A1W2PPL8 197 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 LINC01548A6NM66 108 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 KPNA7A9QM74 516 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 TARM1B6A8C7 271 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 HNRNPRO43390 633 aaKnown RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 FAM189A1O60320 539 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 DFNA5O60443 496 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 HUS1O60921 280 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 CSO75390 466 aaKnown RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 DNAJB5O75953 348 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 JTBO76095 146 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 LARGE1O95461 756 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 OLFM2O95897 454 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 RARGP13631 454 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 HOXB2P14652 356 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 GAP43P17677 238 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 HTR1BP28222 390 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms