RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 MRPS28Q9Y2Q9 187 aaKnown RBP3.55□□□□□ -1.84
VPS50-219ENST00000495039 A0A1W2PPH5 198 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 TTC36A6NLP5 189 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 CLIC2O15247 247 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 SRSF10O75494 262 aaKnown RBP3.54□□□□□ -1.84
VPS50-219ENST00000495039 HEXAP06865 529 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 IRF1P10914 325 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 EDN2P20800 178 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 ABCD1P33897 745 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 AMPHP49418 695 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 DDX10Q13206 875 aaKnown RBP3.54□□□□□ -1.84
VPS50-219ENST00000495039 HIST2H2ACQ16777 129 aaPredicted RBP3.54□□□□□ -1.84
VPS50-219ENST00000495039 UGP2Q16851 508 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 GGNBP1Q5YKI7 109 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 INO80CQ6PI98 192 aaPredicted RBP3.54□□□□□ -1.84
VPS50-219ENST00000495039 ZNF704Q6ZNC4 412 aaPredicted RBP3.54□□□□□ -1.84
VPS50-219ENST00000495039 R3HCC1LQ7Z5L2 792 aaKnown RBP3.54□□□□□ -1.84
VPS50-219ENST00000495039 SPATA6LQ8N4H0 392 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 TEX19Q8NA77 164 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 RFFLQ8WZ73 363 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 KLHL29Q96CT2 875 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 H2AFJQ9BTM1 129 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 SLC25A18Q9H1K4 315 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 NDST4Q9H3R1 872 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 BPIFA1Q9NP55 256 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 ADPRHL2Q9NX46 363 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 HSPB7Q9UBY9 170 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 ZHX2Q9Y6X8 837 aa3.54□□□□□ -1.84
VPS50-219ENST00000495039 SH3BP5O60239 455 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 WDHD1O75717 1129 aaPredicted RBP3.53□□□□□ -1.84
VPS50-219ENST00000495039 RTN3O95197 1032 aaPredicted RBP3.53□□□□□ -1.84
VPS50-219ENST00000495039 MBD4O95243 580 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 MT-CYBP00156 380 aaPredicted RBP3.53□□□□□ -1.84
VPS50-219ENST00000495039 UBL4AP11441 157 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 ZNF23P17027 643 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 MAP2K2P36507 400 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 CTCFP49711 727 aaPredicted RBP3.53□□□□□ -1.84
VPS50-219ENST00000495039 GNAQP50148 359 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 MPP1Q00013 466 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 TUBB2AQ13885 445 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 PPP2R5BQ15173 497 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 ZBTB2Q8N680 514 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 TUBB2BQ9BVA1 445 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 PCDHB16Q9NRJ7 776 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 TAS2R10Q9NYW0 307 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 ACSL5Q9ULC5 683 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 TP53TG3Q9ULZ0 132 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 FAM96BQ9Y3D0 163 aa3.53□□□□□ -1.84
VPS50-219ENST00000495039 TNFSF14O43557 240 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 TNFAIP3P21580 790 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 EPHA8P29322 1005 aaPredicted RBP3.52□□□□□ -1.85
VPS50-219ENST00000495039 AHRP35869 848 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 CPOXP36551 454 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 HARS2P49590 506 aaKnown RBP3.52□□□□□ -1.85
VPS50-219ENST00000495039 EIF3BP55884 814 aaKnown RBP3.52□□□□□ -1.85
VPS50-219ENST00000495039 RUNX1T1Q06455 604 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 GSTA3Q16772 222 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 TXNDC8Q6A555 127 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 FAAH2Q6GMR7 532 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 DUS1LQ6P1R4 473 aaKnown RBP3.52□□□□□ -1.85
VPS50-219ENST00000495039 FBXO46Q6PJ61 603 aaPredicted RBP3.52□□□□□ -1.85
VPS50-219ENST00000495039 BRAT1Q6PJG6 821 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 SLC46A3Q7Z3Q1 461 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 PCDH20Q8N6Y1 951 aaKnown RBP3.52□□□□□ -1.85
VPS50-219ENST00000495039 NR1H4Q96RI1 486 aaPredicted RBP3.52□□□□□ -1.85
VPS50-219ENST00000495039 USP44Q9H0E7 712 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 ZHX3Q9H4I2 956 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 PRKRIP1Q9H875 184 aaPredicted RBP3.52□□□□□ -1.85
VPS50-219ENST00000495039 HINT3Q9NQE9 182 aaKnown RBP3.52□□□□□ -1.85
VPS50-219ENST00000495039 A4GNTQ9UNA3 340 aa3.52□□□□□ -1.85
VPS50-219ENST00000495039 KDM3AQ9Y4C1 1321 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 ZCWPW2A0A1B0GU75 182 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 A0A1W2PQM1 296 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 LRRC53A6NM62 1247 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 B4E171 279 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 E9PQ18 207 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 CD4P01730 458 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 TFP02787 698 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 TSPAN7P41732 249 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 GABRB2P47870 512 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 FASLGP48023 281 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 CCR9P51686 369 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 PLIN5Q00G26 463 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 FOXM1Q08050 763 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 SPOCK1Q08629 439 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 RNPS1Q15287 305 aaKnown RBP3.51□□□□□ -1.85
VPS50-219ENST00000495039 TSTQ16762 297 aaKnown RBP3.51□□□□□ -1.85
VPS50-219ENST00000495039 C2orf68Q2NKX9 166 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 XKR6Q5GH73 641 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 RSRC2Q7L4I2 434 aaKnown RBP3.51□□□□□ -1.85
VPS50-219ENST00000495039 MAATS1Q7Z4T9 603 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 TDRPQ86YL5 185 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 DIS3L2Q8IYB7 885 aaKnown RBP3.51□□□□□ -1.85
VPS50-219ENST00000495039 CNTROBQ8N137 903 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 PPHLN1Q8NEY8 458 aaKnown RBP3.51□□□□□ -1.85
VPS50-219ENST00000495039 METTL6Q8TCB7 284 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 SLC38A5Q8WUX1 472 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 UCMAQ8WVF2 138 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 HDAC2Q92769 488 aaKnown RBP3.51□□□□□ -1.85
VPS50-219ENST00000495039 C7orf26Q96N11 449 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms