RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	PRDM8	Q9NQV8	689 aa		18.19	■□□□□ 0.5
HDAC6-231	ENST00000488905	SIDT1	Q9NXL6	827 aa	Known RBP	18.19	■□□□□ 0.5
HDAC6-231	ENST00000488905	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	18.19	■□□□□ 0.5
HDAC6-231	ENST00000488905	TMEM184B	Q9Y519	407 aa	Predicted RBP	18.19	■□□□□ 0.5
HDAC6-231	ENST00000488905	LRRK2	Q5S007	2527 aa		18.19	■□□□□ 0.5
HDAC6-231	ENST00000488905	LOC101059948	A0A1B0GTJ6	334 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	SYCE3	A1L190	88 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	GPR89A	B7ZAQ6	455 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	SLC4A1	P02730	911 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	ANKRD34C	P0C6C1	535 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	GPR89B	P0CG08	455 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	CASP14	P31944	242 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	TLE1	Q04724	770 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	ABHD18	Q0P651	414 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	CDC20	Q12834	499 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	PLA2G4E	Q3MJ16	856 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	TIPARP	Q7Z3E1	657 aa	Known RBP	18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	PLXDC1	Q8IUK5	500 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	UNC5B	Q8IZJ1	945 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	GPR26	Q8NDV2	337 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	EFHD1	Q9BUP0	239 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	CEP41	Q9BYV8	373 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	BRD8	Q9H0E9	1235 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	KLC4	Q9NSK0	619 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	SHOC2	Q9UQ13	582 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	HEY1	Q9Y5J3	304 aa		18.18	■□□□□ 0.5
HDAC6-231	ENST00000488905	LRRD1	A4D1F6	860 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	CYSRT1	A8MQ03	144 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	ZNF487	B1APH4	448 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	POLR1C	O15160	346 aa	Predicted RBP	18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	NKX2-8	O15522	239 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	SLC25A14	O95258	325 aa	Predicted RBP	18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	DLGAP3	O95886	979 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	PIRT	P0C851	137 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	PRKAR1A	P10644	381 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	HNRNPH3	P31942	346 aa	Known RBP	18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	GFER	P55789	205 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	AP1B1	Q10567	949 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	SLC18A3	Q16572	532 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	INSC	Q1MX18	579 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	ZNF648	Q5T619	568 aa	Predicted RBP	18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	PDPK2P	Q6A1A2	396 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	SLC9A4	Q6AI14	798 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	CRTC3	Q6UUV7	619 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	ADGRG6	Q86SQ4	1221 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	PTRH1	Q86Y79	214 aa	Known RBP	18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	TRAM1L1	Q8N609	369 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	GLYATL1	Q969I3	302 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	IMP4	Q96G21	291 aa	Known RBP	18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	PLEKHG4B	Q96PX9	1271 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	TRIT1	Q9H3H1	467 aa	Known RBP	18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	UCK1	Q9HA47	277 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	TRIM39	Q9HCM9	518 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	RAD18	Q9NS91	495 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	IFNK	Q9P0W0	207 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	ZNF711	Q9Y462	761 aa		18.17	■□□□□ 0.5
HDAC6-231	ENST00000488905	CHUK	O15111	745 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	C9	P02748	559 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	FAM182A	Q5T1J6	154 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	TMEM26	Q6ZUK4	368 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	KDELC2	Q7Z4H8	507 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	NT5DC3	Q86UY8	548 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	VSIG1	Q86XK7	387 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	TRIM48	Q8IWZ4	208 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	STARD8	Q92502	1023 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	C9orf72	Q96LT7	481 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	OLFM3	Q96PB7	478 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	MAGEE1	Q9HCI5	957 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	OGFR	Q9NZT2	677 aa		18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	SCHIP1	Q9P0W5	487 aa	Predicted RBP	18.16	■□□□□ 0.5
HDAC6-231	ENST00000488905	C3orf70	A6NLC5	250 aa	Predicted RBP	18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	GOLGA6L19	H0YKK7	550 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	APOL1	O14791	398 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	PPP1R12A	O14974	1030 aa	Predicted RBP	18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	VIP	P01282	170 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	TMEM253	P0C7T8	217 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	XRCC1	P18887	633 aa	Predicted RBP	18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	OAS2	P29728	719 aa	Known RBP	18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	STAT5A	P42229	794 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	NOP2	P46087	812 aa	Known RBP	18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	MAP7	Q14244	749 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	MESD	Q14696	234 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	PDK1	Q15118	436 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	SLC14A2	Q15849	920 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	SEPT7	Q16181	437 aa	Known RBP	18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	PCSK7	Q16549	785 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	TMC3	Q7Z5M5	1100 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	LRRTM4	Q86VH4	590 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	ESX1	Q8N693	406 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	C9orf43	Q8TAL5	461 aa	Predicted RBP	18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	TADA1	Q96BN2	335 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	AGAP3	Q96P47	875 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	TIMM29	Q9BSF4	260 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	GPR63	Q9BZJ6	419 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	SLC25A51	Q9H1U9	297 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	EPN3	Q9H201	632 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	SLC23A2	Q9UGH3	650 aa		18.15	■□□□□ 0.5
HDAC6-231	ENST00000488905	PRR19	A6NJB7	356 aa		18.14	■□□□□ 0.49
HDAC6-231	ENST00000488905	PDZK1P1	A8MUH7	402 aa		18.14	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms