RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 PACS1Q6VY07 963 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 CACNA2D4Q7Z3S7 1137 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 ADGRG6Q86SQ4 1221 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 TDRPQ86YL5 185 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 SLC39A11Q8N1S5 342 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 LSM14AQ8ND56 463 aaKnown RBP2.77□□□□□ -1.97
SMC4-220ENST00000488017 SVIPQ8NHG7 77 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 RTP3Q9BQQ7 232 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 ZNF700Q9H0M5 742 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 APOBEC3GQ9HC16 384 aaKnown RBP2.77□□□□□ -1.97
SMC4-220ENST00000488017 GRHPRQ9UBQ7 328 aa2.77□□□□□ -1.97
SMC4-220ENST00000488017 ASTN2O75129 1339 aaPredicted RBP2.76□□□□□ -1.97
SMC4-220ENST00000488017 GIMAP1-GIMAP5A0A087WTJ2 511 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 IGKV6D-21A0A0A0MT36 114 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 PLOD2O00469 737 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 KCNN4O15554 427 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 GALTP07902 379 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 IFIT2P09913 472 aaKnown RBP2.76□□□□□ -1.97
SMC4-220ENST00000488017 UBA7P41226 1012 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 GPD2P43304 727 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 GABRB2P47870 512 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 EFNB1P98172 346 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 ZNF766Q5HY98 468 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 ADGRA1Q86SQ6 560 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 Q8N377 158 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 SLC44A1Q8WWI5 657 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 APBB2Q92870 758 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 GIMAP5Q96F15 307 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 CRB3Q9BUF7 120 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 LAT2Q9GZY6 243 aa2.76□□□□□ -1.97
SMC4-220ENST00000488017 IGHV4-4A0A075B6R2 117 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 A0A1W2PP11 408 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 FAM90A26D6RGX4 464 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 TNPO2O14787 897 aaKnown RBP2.75□□□□□ -1.97
SMC4-220ENST00000488017 KLK10O43240 276 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 AP2A2O94973 939 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 RAF1P04049 648 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 CBLP22681 906 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 TRA2BP62995 288 aaKnown RBP2.75□□□□□ -1.97
SMC4-220ENST00000488017 CCDC38Q502W7 563 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 FASTKD1Q53R41 847 aaKnown RBP2.75□□□□□ -1.97
SMC4-220ENST00000488017 HIST2H2BDQ6DRA6 164 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 QSOX2Q6ZRP7 698 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 TOGARAM2Q6ZUX3 1019 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 PLD5Q8N7P1 536 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 ZPLD1Q8TCW7 415 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 OMA1Q96E52 524 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 PRAC1Q96KF2 57 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 PRMT6Q96LA8 375 aaPredicted RBP2.75□□□□□ -1.97
SMC4-220ENST00000488017 TRPC7Q9HCX4 862 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 ECHDC1Q9NTX5 307 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 ACSS1Q9NUB1 689 aaPredicted RBP2.75□□□□□ -1.97
SMC4-220ENST00000488017 RARRES3Q9UL19 164 aa2.75□□□□□ -1.97
SMC4-220ENST00000488017 PRRC2AP48634 2157 aaKnown RBP2.75□□□□□ -1.97
SMC4-220ENST00000488017 UTYO14607 1347 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 ZNF318Q5VUA4 2279 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 ANKRD28O15084 1053 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 SEC14L5O43304 696 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 TSPAN3O60637 253 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 TFAP2AP05549 437 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 HOXB5P09067 269 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 ANXA7P20073 488 aaKnown RBP2.74□□□□□ -1.97
SMC4-220ENST00000488017 UGT1A1P22309 533 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 APOBEC1P41238 236 aaKnown RBP2.74□□□□□ -1.97
SMC4-220ENST00000488017 HTR3AP46098 478 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 DUOXA1Q1HG43 343 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 USP41Q3LFD5 358 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 C2CD6Q53TS8 623 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 TMEM81Q6P7N7 255 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 Q6ZSR9 355 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 RAPH1Q70E73 1250 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 RUFY2Q8WXA3 655 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 H2AFJQ9BTM1 129 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 RAB11FIP5Q9BXF6 653 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 TRIM6Q9C030 488 aaPredicted RBP2.74□□□□□ -1.97
SMC4-220ENST00000488017 LTB4R2Q9NPC1 389 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 C20orf141Q9NUB4 165 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 SLC38A7Q9NVC3 462 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 CEPT1Q9Y6K0 416 aa2.74□□□□□ -1.97
SMC4-220ENST00000488017 COL4A4P53420 1690 aaPredicted RBP2.73□□□□□ -1.97
SMC4-220ENST00000488017 ABHD14A-ACY1A0A1B0GW23 586 aa2.73□□□□□ -1.97
SMC4-220ENST00000488017 BCL2L11O43521 198 aa2.73□□□□□ -1.97
SMC4-220ENST00000488017 TACC1O75410 805 aa2.73□□□□□ -1.97
SMC4-220ENST00000488017 TRMUO75648 421 aaKnown RBP2.73□□□□□ -1.97
SMC4-220ENST00000488017 VEGFAP15692 232 aaPredicted RBP2.73□□□□□ -1.97
SMC4-220ENST00000488017 MS4A2Q01362 244 aa2.73□□□□□ -1.97
SMC4-220ENST00000488017 MAD2L1Q13257 205 aaPredicted RBP2.73□□□□□ -1.97
SMC4-220ENST00000488017 TEAD2Q15562 447 aa2.73□□□□□ -1.97
SMC4-220ENST00000488017 ADCK5Q3MIX3 580 aa2.73□□□□□ -1.97
SMC4-220ENST00000488017 MAP9Q49MG5 647 aa2.73□□□□□ -1.97
SMC4-220ENST00000488017 PAPD4Q6PIY7 484 aaKnown RBP2.73□□□□□ -1.97
SMC4-220ENST00000488017 Q75L30 129 aa2.73□□□□□ -1.97
SMC4-220ENST00000488017 ISCA2Q86U28 154 aa2.73□□□□□ -1.97
SMC4-220ENST00000488017 OXNAD1Q96HP4 312 aaPredicted RBP2.73□□□□□ -1.97
SMC4-220ENST00000488017 RHNO1Q9BSD3 238 aa2.73□□□□□ -1.97
SMC4-220ENST00000488017 LRRC61Q9BV99 259 aa2.73□□□□□ -1.97
SMC4-220ENST00000488017 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.72□□□□□ -1.97
SMC4-220ENST00000488017 VCYO14598 125 aa2.72□□□□□ -1.97
SMC4-220ENST00000488017 SYNCRIPO60506 623 aaKnown RBP2.72□□□□□ -1.97
SMC4-220ENST00000488017 HOXC9P31274 260 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms