RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ACSL4O60488 711 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 RPS17P08708 135 aaKnown RBP17.81■□□□□ 0.44
VIM-206ENST00000487938 ZFP36L2P47974 494 aaKnown RBP17.81■□□□□ 0.44
VIM-206ENST00000487938 GSK3BP49841 420 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 PRKCZQ05513 592 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 BNIP2Q12982 314 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 TAF1AQ15573 450 aaPredicted RBP17.81■□□□□ 0.44
VIM-206ENST00000487938 BORAQ6PGQ7 559 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 DENND1CQ8IV53 801 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 EFHBQ8N7U6 833 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 PSKH2Q96QS6 385 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 MAGEH1Q9H213 219 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 CLK4Q9HAZ1 481 aaKnown RBP17.81■□□□□ 0.44
VIM-206ENST00000487938 SCUBE2Q9NQ36 999 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 PCTPQ9UKL6 214 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 OAZ3Q9UMX2 235 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 OAS3Q9Y6K5 1087 aaKnown RBP17.81■□□□□ 0.44
VIM-206ENST00000487938 HTTP42858 3142 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 SYCE1LA8MT33 242 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 VPS4BO75351 444 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 CLIC3O95833 236 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 ELNP15502 786 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 MC4RP32245 332 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 OXCT1P55809 520 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 LIPEQ05469 1076 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 ZRANB3Q5FWF4 1079 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 IRAK1BP1Q5VVH5 260 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 ALG1LQ6GMV1 187 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 SPATA19Q7Z5L4 167 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 ZNF786Q8N393 782 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 TTC16Q8NEE8 873 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 ALG2Q9H553 416 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 EIF2B4Q9UI10 523 aaKnown RBP17.8■□□□□ 0.44
VIM-206ENST00000487938 HEMK1Q9Y5R4 338 aaPredicted RBP17.8■□□□□ 0.44
VIM-206ENST00000487938 V9GYQ6 96 aa17.8■□□□□ 0.44
VIM-206ENST00000487938 CCDC154A6NI56 674 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 IQCF5A8MTL0 148 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 CBX4O00257 560 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 GPR39O43194 453 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 SNX2O60749 519 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 SLC22A3O75751 556 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 OR4F21O95013 312 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 GJB5O95377 273 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 ESRRBO95718 433 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 MT-ND1P03886 318 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 UROSP10746 265 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 ALDH3B2P48448 385 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 SGSHP51688 502 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 FAM189BP81408 668 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 ILF2Q12905 390 aaKnown RBP17.79■□□□□ 0.44
VIM-206ENST00000487938 TMEM259Q4ZIN3 620 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 CTSL3PQ5NE16 218 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 CDYL2Q8N8U2 506 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 MYRFLQ96LU7 910 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 KCTD14Q9BQ13 255 aaPredicted RBP17.79■□□□□ 0.44
VIM-206ENST00000487938 NACA2Q9H009 215 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 AIG1Q9NVV5 245 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 CD274Q9NZQ7 290 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 HSFX1Q9UBD0 423 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 RSL24D1Q9UHA3 163 aaKnown RBP17.79■□□□□ 0.44
VIM-206ENST00000487938 ZFC3H1O60293 1989 aaKnown RBP17.79■□□□□ 0.44
VIM-206ENST00000487938 OR6C75A6NL08 312 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 TSPAN3O60637 253 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 TRMUO75648 421 aaKnown RBP17.79■□□□□ 0.44
VIM-206ENST00000487938 TSPAN12O95859 305 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 PYGLP06737 847 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 PRR35P0CG20 571 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 PKMP14618 531 aaKnown RBP17.79■□□□□ 0.44
VIM-206ENST00000487938 IL12AP29459 219 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 ARL1P40616 181 aaPredicted RBP17.79■□□□□ 0.44
VIM-206ENST00000487938 MERTKQ12866 999 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 INTS11Q5TA45 600 aaKnown RBP17.79■□□□□ 0.44
VIM-206ENST00000487938 OGFOD2Q6N063 350 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 TRAF7Q6Q0C0 670 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 C16orf59Q7L2K0 433 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 TAS1R1Q7RTX1 841 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 NKAPQ8N5F7 415 aaKnown RBP17.79■□□□□ 0.44
VIM-206ENST00000487938 TRPV3Q8NET8 790 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 NUDT8Q8WV74 236 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 LINGO1Q96FE5 620 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 PHF12Q96QT6 1004 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 MUC3BQ9H195 1237 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 THEGQ9P2T0 379 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 ATXN10Q9UBB4 475 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 TRMT6Q9UJA5 497 aaKnown RBP17.79■□□□□ 0.44
VIM-206ENST00000487938 SLC8A2Q9UPR5 921 aa17.79■□□□□ 0.44
VIM-206ENST00000487938 ANKRD36A6QL64 1941 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 MOXD2PA6NHM9 499 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 SLC38A8A6NNN8 435 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 KDELR3O43731 214 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 VPS26AO75436 327 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 CHEK2O96017 543 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 PRKAR2AP13861 404 aaKnown RBP17.78■□□□□ 0.44
VIM-206ENST00000487938 LPOP22079 712 aaPredicted RBP17.78■□□□□ 0.44
VIM-206ENST00000487938 CCT8P50990 548 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 POLR2JP52435 117 aaKnown RBP17.78■□□□□ 0.44
VIM-206ENST00000487938 GPR17Q13304 367 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 RCAN2Q14206 197 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 C18orf21Q32NC0 220 aaPredicted RBP17.78■□□□□ 0.44
VIM-206ENST00000487938 TIGD2Q4W5G0 525 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms