RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PDPK2PQ6A1A2 396 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 TMEM71Q6P5X7 295 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 RAD9BQ6WBX8 426 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 ZNF547Q8IVP9 402 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 HTR3CQ8WXA8 447 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 MRFAP1L1Q96HT8 127 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 HEMGNQ9BXL5 484 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 B3GNT4Q9C0J1 378 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 BPIFA1Q9NP55 256 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 PRDM8Q9NQV8 689 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 SCHIP1Q9P0W5 487 aaPredicted RBP18.34■□□□□ 0.53
COL7A1-209ENST00000474432 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.33■□□□□ 0.52
COL7A1-209ENST00000474432 MTSS1O43312 755 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 MTX2O75431 263 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 LIPCP11150 499 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 F3P13726 295 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 WT1P19544 449 aaPredicted RBP18.33■□□□□ 0.52
COL7A1-209ENST00000474432 CTNNA1P35221 906 aaKnown RBP18.33■□□□□ 0.52
COL7A1-209ENST00000474432 CYLC1P35663 651 aaPredicted RBP18.33■□□□□ 0.52
COL7A1-209ENST00000474432 HMGCLP35914 325 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 UBE2IP63279 158 aaKnown RBP18.33■□□□□ 0.52
COL7A1-209ENST00000474432 GPLD1P80108 840 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 HHEXQ03014 270 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 BIRC2Q13490 618 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 SPA17Q15506 151 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 KIAA1614Q5VZ46 1190 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 CCDC81Q6ZN84 652 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 PID1Q7Z2X4 250 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 C11orf96Q7Z7L8 435 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 WBP1Q96G27 269 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 RBM41Q96IZ5 413 aaKnown RBP18.33■□□□□ 0.52
COL7A1-209ENST00000474432 PLEKHG4BQ96PX9 1271 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 LACRTQ9GZZ8 138 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 IL26Q9NPH9 171 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 RAD18Q9NS91 495 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 PCDHA3Q9Y5H8 950 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 COL6A6A6NMZ7 2263 aa18.33■□□□□ 0.52
COL7A1-209ENST00000474432 PIEZO2Q9H5I5 2752 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 HACD1B0YJ81 288 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 GPR89AB7ZAQ6 455 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 APOC4-APOC2K7ER74 178 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 GAPDHSO14556 408 aaPredicted RBP18.32■□□□□ 0.52
COL7A1-209ENST00000474432 ZW10O43264 779 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 SNX2O60749 519 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 APOC2P02655 101 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 GPR89BP0CG08 455 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 RBL1P28749 1068 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 NFATC2Q13469 925 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 ATP13A5Q4VNC0 1218 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 CRTC3Q6UUV7 619 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 DAAM2Q86T65 1068 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 GAS2L3Q86XJ1 694 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 CCDC50Q8IVM0 306 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 ZNF843Q8N446 348 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 SLC25A41Q8N5S1 370 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 BMPERQ8N8U9 685 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 VPS35Q96QK1 796 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 SRPK1Q96SB4 655 aaKnown RBP18.32■□□□□ 0.52
COL7A1-209ENST00000474432 VAT1Q99536 393 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 SLC38A3Q99624 504 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 DPYSL5Q9BPU6 564 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 SEMA4CQ9C0C4 833 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 KLC4Q9NSK0 619 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 OCIAD1Q9NX40 245 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.32■□□□□ 0.52
COL7A1-209ENST00000474432 IL17CQ9P0M4 197 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 KLHL8Q9P2G9 620 aaPredicted RBP18.32■□□□□ 0.52
COL7A1-209ENST00000474432 PCDHGA3Q9Y5H0 932 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 ZNF462Q96JM2 2506 aa18.32■□□□□ 0.52
COL7A1-209ENST00000474432 ZNF106Q9H2Y7 1883 aaKnown RBP18.31■□□□□ 0.52
COL7A1-209ENST00000474432 KIR2DS5A0A0G2JLQ3 304 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 A0A0G2JNG1 304 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 EIF4E1BA6NMX2 242 aaKnown RBP18.31■□□□□ 0.52
COL7A1-209ENST00000474432 KIR2DS3K7RE56 304 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 BRAFP15056 766 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 XRCC4Q13426 336 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 KIR2DS5Q14953 304 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 SLC1A5Q15758 541 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 CCDC70Q6NSX1 233 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 ARHGAP22Q7Z5H3 698 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 TMTC1Q8IUR5 882 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 PHYKPLQ8IUZ5 450 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 DTX3LQ8TDB6 740 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 ANP32EQ9BTT0 268 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 TRABDQ9H4I3 376 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 OGFRQ9NZT2 677 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 ZNF624Q9P2J8 865 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-209ENST00000474432 CPNE7Q9UBL6 633 aa18.31■□□□□ 0.52
COL7A1-209ENST00000474432 BTNL10A8MVZ5 291 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 GPR39O43194 453 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 VEGFDO43915 354 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 ZNF7P17097 686 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-209ENST00000474432 PTPN7P35236 360 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 SLC19A1P41440 591 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 COPS2P61201 443 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 MPP3Q13368 585 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 PLA2G4EQ3MJ16 856 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 AADACL2Q6P093 401 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 WDR74Q6RFH5 385 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-209ENST00000474432 SLC9B2Q86UD5 537 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms