RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 GSSP48637 474 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 PABPC1LQ4VXU2 614 aaKnown RBP11.55□□□□□ -0.56
NPHP4-204ENST00000460696 TMC5Q6UXY8 1006 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 RNF19BQ6ZMZ0 732 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 SLC44A2Q8IWA5 706 aaPredicted RBP11.55□□□□□ -0.56
NPHP4-204ENST00000460696 TTC30BQ8N4P2 665 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 CBR4Q8N4T8 237 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 HJURPQ8NCD3 748 aaPredicted RBP11.55□□□□□ -0.56
NPHP4-204ENST00000460696 TNIP2Q8NFZ5 429 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 NRG4Q8WWG1 115 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 SH3GL1Q99961 368 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 HOPXQ9BPY8 73 aaPredicted RBP11.55□□□□□ -0.56
NPHP4-204ENST00000460696 CORO1BQ9BR76 489 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 ATP13A3Q9H7F0 1226 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 SH3BP4Q9P0V3 963 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 HS6ST1O60243 411 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 ABCB1P08183 1280 aaPredicted RBP11.55□□□□□ -0.56
NPHP4-204ENST00000460696 SULT2A1Q06520 285 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 ILF2Q12905 390 aaKnown RBP11.55□□□□□ -0.56
NPHP4-204ENST00000460696 STARD3Q14849 445 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 TXNDC11Q6PKC3 985 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 RANBP10Q6VN20 620 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 ZNF621Q6ZSS3 439 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 RNF217Q8TC41 542 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 CANT1Q8WVQ1 401 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 IMP4Q96G21 291 aaKnown RBP11.55□□□□□ -0.56
NPHP4-204ENST00000460696 MYO19Q96H55 970 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 C8orf48Q96LL4 319 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 RMND5AQ9H871 391 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 IPPKQ9H8X2 491 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.55□□□□□ -0.56
NPHP4-204ENST00000460696 POLR3BQ9NW08 1133 aaPredicted RBP11.55□□□□□ -0.56
NPHP4-204ENST00000460696 GNPTGQ9UJJ9 305 aa11.55□□□□□ -0.56
NPHP4-204ENST00000460696 SMIM31A0A1B0GVY4 71 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 MTMR11A4FU01 709 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 OTCP00480 354 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 OR56A5P0C7T3 313 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 SLC11A1P49279 550 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 CCT8P50990 548 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 CCNIQ14094 377 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 PLCL1Q15111 1095 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 MCOLN3Q8TDD5 553 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 PGAP3Q96FM1 320 aaPredicted RBP11.54□□□□□ -0.56
NPHP4-204ENST00000460696 OSBPL11Q9BXB4 747 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 TRIM8Q9BZR9 551 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 RHBDL2Q9NX52 303 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 PTGDR2Q9Y5Y4 395 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 RFXAPO00287 272 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 NTRK1P04629 796 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 UGT1A6P19224 532 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 UGT1A1P22309 533 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 UGT1A4P22310 534 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 UGT1A3P35503 534 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 UGT1A5P35504 534 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 SOAT1P35610 550 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 GGT5P36269 586 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 NR1H2P55055 460 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 LIPEQ05469 1076 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 CEACAM7Q14002 265 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 SPESP1Q6UW49 350 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 CLDN19Q8N6F1 224 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 NSUN5Q96P11 429 aaKnown RBP11.54□□□□□ -0.56
NPHP4-204ENST00000460696 TSSK3Q96PN8 268 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 BTBD9Q96Q07 612 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 TMEM30AQ9NV96 361 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 ARIH1Q9Y4X5 557 aaPredicted RBP11.54□□□□□ -0.56
NPHP4-204ENST00000460696 ACTL7AQ9Y615 435 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 SIPA1L1O43166 1804 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 A0A087WXM4 84 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 PRR23AA6NEV1 266 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 HAS3O00219 553 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 KPNA3O00505 521 aaPredicted RBP11.54□□□□□ -0.56
NPHP4-204ENST00000460696 ECI2O75521 394 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 CA3P07451 260 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 ALPIP09923 528 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 PRSS56P0CW18 603 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 POLR2JP52435 117 aaKnown RBP11.54□□□□□ -0.56
NPHP4-204ENST00000460696 IL5RAQ01344 420 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 IRF8Q02556 426 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 SERINC3Q13530 473 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 PSRC1Q6PGN9 363 aaPredicted RBP11.54□□□□□ -0.56
NPHP4-204ENST00000460696 B3GNT6Q6ZMB0 384 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 NPAS4Q8IUM7 802 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 SPNS2Q8IVW8 549 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 ARHGAP12Q8IWW6 846 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 RBFAQ8N0V3 343 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 TAGAPQ8N103 731 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 UMODL1-AS1Q8N2C9 162 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 EMILIN2Q9BXX0 1053 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 TMEM248Q9NWD8 314 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 USP3Q9Y6I4 520 aa11.54□□□□□ -0.56
NPHP4-204ENST00000460696 MGAT4DA6NG13 374 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 HNRNPRO43390 633 aaKnown RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 KCNH1O95259 989 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 GSNP06396 782 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 MSH3P20585 1137 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 OGNP20774 298 aaKnown RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 GJA8P48165 433 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 BNIP2Q12982 314 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 TECRLQ5HYJ1 363 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms