RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 PQLC1Q8N2U9 271 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 PTCD2Q8WV60 388 aaKnown RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 LRTOMTQ8WZ04 291 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 LPGAT1Q92604 370 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 EID2BQ96D98 161 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 LRGUKQ96M69 825 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 CORO1BQ9BR76 489 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 ZNF385DQ9H6B1 395 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 TMEM165Q9HC07 324 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 UBAP1Q9NZ09 502 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 CLEC4EQ9ULY5 219 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 YBX2Q9Y2T7 364 aaKnown RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 SNX13Q9Y5W8 968 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 NUP214P35658 2090 aaPredicted RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 TRPC5OSA6NMA1 111 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 H0Y626 953 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 H3BNC9 293 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 GRM6O15303 877 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 CCL16O15467 120 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 NPHS1O60500 1241 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 H2AFYO75367 372 aaKnown RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 KATNA1O75449 491 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 NDUFS3O75489 264 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 GUCA1CO95843 209 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 ATP5BP06576 529 aaKnown RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 HGFP14210 728 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 CKMT2P17540 419 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 GRIA2P42262 883 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 EPHB3P54753 998 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 CDKL1Q00532 357 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 UGT3A2Q3SY77 523 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 PARP15Q460N3 678 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 ADGRF1Q5T601 910 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 MRNIPQ6NTE8 343 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 FAM81AQ8TBF8 368 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 DNAJB14Q8TBM8 379 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 GRIN3AQ8TCU5 1115 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 PPWD1Q96BP3 646 aaKnown RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 CACNA2D2Q9NY47 1150 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 UBA2Q9UBT2 640 aaPredicted RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 EVLQ9UI08 416 aaPredicted RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 RNF112Q9ULX5 631 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 USP22Q9UPT9 525 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 RPP40O75818 363 aaKnown RBP9.4□□□□□ -0.9
CUX1-206ENST00000437600 CXCL14O95715 111 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 PSMC3P17980 439 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 UGT1A1P22309 533 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 UGT1A4P22310 534 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 UGT1A3P35503 534 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 UGT1A5P35504 534 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 SLC7A2P52569 658 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 RAB33AQ14088 237 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 CYTH1Q15438 398 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 REP15Q6BDI9 236 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 AAGABQ6PD74 315 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 KIAA0408Q6ZU52 694 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 LRRC49Q8IUZ0 686 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 PGAM4Q8N0Y7 254 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 PELI3Q8N2H9 469 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 CPSF7Q8N684 471 aaKnown RBP9.4□□□□□ -0.9
CUX1-206ENST00000437600 ICA1LQ8NDH6 482 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 POF1BQ8WVV4 589 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 C19orf60Q96EN9 201 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 DCUN1D1Q96GG9 259 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 MAELQ96JY0 434 aaKnown RBP9.4□□□□□ -0.9
CUX1-206ENST00000437600 SERPINI1Q99574 410 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 NOL11Q9H8H0 719 aaKnown RBP9.4□□□□□ -0.9
CUX1-206ENST00000437600 MRM3Q9HC36 420 aaKnown RBP9.4□□□□□ -0.9
CUX1-206ENST00000437600 SCUBE2Q9NQ36 999 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 DTNAQ9Y4J8 743 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 RAI2Q9Y5P3 530 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 SMAD6O43541 496 aaKnown RBP9.4□□□□□ -0.9
CUX1-206ENST00000437600 UQCRBP14927 111 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 MC4RP32245 332 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 GDF5P43026 501 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 STC1P52823 247 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 HERVK_113P63132 956 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 RPS6KA2Q15349 733 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 LARP4Q71RC2 724 aaKnown RBP eCLIP9.4□□□□□ -0.93e-6■■□□□ 13.7
CUX1-206ENST00000437600 CPNE9Q8IYJ1 553 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 TSPAN17Q96FV3 270 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 ZFRQ96KR1 1074 aaKnown RBP9.4□□□□□ -0.9
CUX1-206ENST00000437600 PLEKHG4BQ96PX9 1271 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 CIB1Q99828 191 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 KLF16Q9BXK1 252 aaPredicted RBP9.4□□□□□ -0.9
CUX1-206ENST00000437600 ERVK-6Q9BXR3 956 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 CCDC68Q9H2F9 335 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 PDFQ9HBH1 243 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 EML4Q9HC35 981 aaKnown RBP9.4□□□□□ -0.9
CUX1-206ENST00000437600 ZNF225Q9UK10 706 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 VPS28Q9UK41 221 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 AURKCQ9UQB9 309 aa9.4□□□□□ -0.9
CUX1-206ENST00000437600 KRT87PA6NCN2 255 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 ANKRD66B4E2M5 251 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 SLCO1B7G3V0H7 640 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 ACOT8O14734 319 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 MRASO14807 208 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 ECI2O75521 394 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 TIPRLO75663 272 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 NDST3O95803 873 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms