RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 MED16Q9Y2X0 877 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 MYO16Q9Y6X6 1858 aa8.31□□□□□ -1.08
CD44-208ENST00000428726 OR2AG2A6NM03 316 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 ANKRD66B4E2M5 251 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 WASH3PC4AMC7 463 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 FESP07332 822 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 MTHFD2P13995 350 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 CD1DP15813 335 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 ZNF37AP17032 561 aaPredicted RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 CRABP2P29373 138 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 PRDX6P30041 224 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 PPARGP37231 505 aaPredicted RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 CCR2P41597 374 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 HK3P52790 923 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 NDST2P52849 883 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 FAM189BP81408 668 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 BFSP2Q13515 415 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 BOP1Q14137 746 aaKnown RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 PTRHD1Q6GMV3 140 aaKnown RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 CXorf57Q6NSI4 855 aaKnown RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 FAM43BQ6ZT52 329 aaPredicted RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 Q6ZVU0 165 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 ANKRD46Q86W74 232 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 TMEM25Q86YD3 366 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 LILRA3Q8N6C8 439 aaPredicted RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 CHST14Q8NCH0 376 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 GABPB2Q8TAK5 448 aaPredicted RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 TWIST2Q8WVJ9 160 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 SNRNP27Q8WVK2 155 aaKnown RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 FATE1Q969F0 183 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 PPM1MQ96MI6 270 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 PRPF18Q99633 342 aaKnown RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 PRKAB1Q9Y478 270 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 LIN7AO14910 233 aaPredicted RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 INPP4BO15327 924 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 RNASEH2AO75792 299 aaKnown RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 VCLP18206 1134 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 KPNA2P52292 529 aaKnown RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 UFM1P61960 85 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 POU4F1Q01851 419 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 IL10RBQ08334 325 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 CPSF6Q16630 551 aaKnown RBP eCLIP8.3□□□□□ -1.08
CD44-208ENST00000428726 SETMARQ53H47 684 aaPredicted RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 C6orf10Q5SRN2 563 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 MRNIPQ6NTE8 343 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 CHST15Q7LFX5 561 aaPredicted RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 DHDDSQ86SQ9 333 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 TMEM150AQ86TG1 271 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 CEP70Q8NHQ1 597 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 ZNF461Q8TAF7 563 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 LPGAT1Q92604 370 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 ABTB1Q969K4 478 aaPredicted RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 MPP4Q96JB8 637 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 FEM1AQ9BSK4 669 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 HGH1Q9BTY7 390 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 ATG10Q9H0Y0 220 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 NOL11Q9H8H0 719 aaKnown RBP8.3□□□□□ -1.08
CD44-208ENST00000428726 ARNT2Q9HBZ2 717 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 ASB3Q9Y575 518 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 COL4A6Q14031 1691 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 CROCCQ5TZA2 2017 aa8.3□□□□□ -1.08
CD44-208ENST00000428726 SLCO1B7G3V0H7 640 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 H3BNC9 293 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 MRASO14807 208 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 SYN3O14994 580 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 HNRNPRO43390 633 aaKnown RBP8.29□□□□□ -1.08
CD44-208ENST00000428726 FKTNO75072 461 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 RPP40O75818 363 aaKnown RBP8.29□□□□□ -1.08
CD44-208ENST00000428726 RTN3O95197 1032 aaPredicted RBP8.29□□□□□ -1.08
CD44-208ENST00000428726 PRAMEF1O95521 474 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 NDST3O95803 873 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 LEPRP48357 1165 aaKnown RBP8.29□□□□□ -1.08
CD44-208ENST00000428726 PSME3P61289 254 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 FOLH1Q04609 750 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 ARHGEF7Q14155 803 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 IKBKEQ14164 716 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 MRPL58Q14197 206 aaKnown RBP8.29□□□□□ -1.08
CD44-208ENST00000428726 ZNF678Q5SXM1 525 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 ADGRF1Q5T601 910 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 SERPINA13PQ6UXR4 307 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 KIAA0408Q6ZU52 694 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 FRA10AC1Q70Z53 315 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 GALNT15Q8N3T1 639 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 BRSK1Q8TDC3 778 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 C19orf60Q96EN9 201 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 AURKBQ96GD4 344 aaPredicted RBP8.29□□□□□ -1.08
CD44-208ENST00000428726 BBS2Q9BXC9 721 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 SEPT3Q9UH03 358 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 ITM2BQ9Y287 266 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 MAGED1Q9Y5V3 778 aaPredicted RBP8.29□□□□□ -1.08
CD44-208ENST00000428726 WNT6Q9Y6F9 365 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 A0A087X1B8 175 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 A0A0J9YYE9 177 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 OR6C75A6NL08 312 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 C2orf81A6NN90 581 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 TGM5O43548 720 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 AHCYL1O43865 530 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 SNX2O60749 519 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 FKBP6O75344 327 aa8.29□□□□□ -1.08
CD44-208ENST00000428726 SLC25A14O95258 325 aaPredicted RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms