RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 VTA1Q9NP79 307 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 GDAP2Q9NXN4 497 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 PRUNE2Q8WUY3 3088 aa8.59□□□□□ -1.03
USP40-203ENST00000427112 HHLA1C9JL84 531 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 CXCL11O14625 94 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 DFNA5O60443 496 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 G6PDP11413 515 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 GPX3P22352 226 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 IL12AP29459 219 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 MAP2K4P45985 399 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 EMP3P54852 163 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 CYP4F2P78329 520 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 CYP4F3Q08477 520 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 INPP5AQ14642 412 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 NR1D2Q14995 579 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 FSCN1Q16658 493 aaKnown RBP8.58□□□□□ -1.04
USP40-203ENST00000427112 ATP6AP1LQ52LC2 224 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 EGFLAMQ63HQ2 1017 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 GLYATQ6IB77 296 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 RANBP10Q6VN20 620 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 BHLHA9Q7RTU4 235 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 C11orf74Q86VG3 221 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 CATSPER1Q8NEC5 780 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 CNIH3Q8TBE1 160 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 FBXO32Q969P5 355 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 NT5C3BQ969T7 300 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 BIRC7Q96CA5 298 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 LINGO1Q96FE5 620 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 FEM1AQ9BSK4 669 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 CATSPERBQ9H7T0 1116 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 IFT80Q9P2H3 777 aaPredicted RBP8.58□□□□□ -1.04
USP40-203ENST00000427112 ANKRD6Q9Y2G4 727 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 TMEM247A6NEH6 219 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 M0R129 80 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 SNAP91O60641 907 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 RAMP2O60895 175 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 PRAMEF12O95522 483 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 KRT75O95678 551 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 CAPN1P07384 714 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 PCSK1P29120 753 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 EIF2B2P49770 351 aaKnown RBP8.58□□□□□ -1.04
USP40-203ENST00000427112 C21orf59P57076 290 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 TAF10Q12962 218 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 CPSF6Q16630 551 aaKnown RBP eCLIP8.58□□□□□ -1.04
USP40-203ENST00000427112 STXBP5Q5T5C0 1151 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 FRA10AC1Q70Z53 315 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 PATL1Q86TB9 770 aaKnown RBP8.58□□□□□ -1.04
USP40-203ENST00000427112 RASAL3Q86YV0 1011 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 CLYBLQ8N0X4 340 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 SLC15A4Q8N697 577 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 TOP6BLQ8N6T0 577 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 NFKBIZQ9BYH8 718 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 ARHGAP39Q9C0H5 1083 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 ENTPD7Q9NQZ7 604 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 TLR8Q9NR97 1041 aaKnown RBP8.58□□□□□ -1.04
USP40-203ENST00000427112 VPS45Q9NRW7 570 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 EYSQ5T1H1 3165 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 H3BMQ9 156 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 FTH1P02794 183 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 CHRM5P08912 532 aaPredicted RBP8.58□□□□□ -1.04
USP40-203ENST00000427112 RBP1P09455 135 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 OCM2P0CE71 109 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 OCMP0CE72 109 aaPredicted RBP8.58□□□□□ -1.04
USP40-203ENST00000427112 LBPP18428 481 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 SEPHS1P49903 392 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 HK2P52789 917 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 MLLT10P55197 1068 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 PFKPQ01813 784 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 ANKRD26P1Q6NSI1 321 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 FAM151BQ6UXP7 276 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 LARP4Q71RC2 724 aaKnown RBP eCLIP8.58□□□□□ -1.04
USP40-203ENST00000427112 GLT6D1Q7Z4J2 308 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 TICAM1Q8IUC6 712 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 DENND1CQ8IV53 801 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 RSPH1Q8WYR4 309 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 COG8Q96MW5 612 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 FCRL5Q96RD9 977 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 ZNF696Q9H7X3 374 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 LATS2Q9NRM7 1088 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 KLQ9UEF7 1012 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 ANGPTL3Q9Y5C1 460 aa8.58□□□□□ -1.04
USP40-203ENST00000427112 TRIM24O15164 1050 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 NCAM2O15394 837 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 CELF2O95319 508 aaKnown RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 LDLRP01130 860 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 CHRNA1P02708 482 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 ZNF37AP17032 561 aaPredicted RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 IMPDH1P20839 514 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 PRDX6P30041 224 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 RPS9P46781 194 aaKnown RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 LHX1P48742 406 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 PPIL2Q13356 520 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 APOFQ13790 326 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 SMN1Q16637 294 aaKnown RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 NANOGP8Q6NSW7 305 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 ELMSAN1Q6PJG2 1045 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 ERMP1Q7Z2K6 904 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 TMCO2Q7Z6W1 182 aaPredicted RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 CARM1Q86X55 608 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 PELI3Q8N2H9 469 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms