RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TSHRP16473 764 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CD247P20963 164 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 DNAJA1P31689 397 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ARCN1P48444 511 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CAPZA1P52907 286 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 MAPK12P53778 367 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PPP3CAQ08209 521 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 GRHL2Q6ISB3 625 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 LRRC70Q7Z2Q7 622 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 DGLUCYQ7Z3D6 616 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 DNAAF5Q86Y56 855 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF567Q8N184 647 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PTGR2Q8N8N7 351 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 OTUB2Q96DC9 234 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 GAL3ST4Q96RP7 486 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 C11orf84Q9BUA3 381 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 RTFDC1Q9BY42 306 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 DUSP16Q9BY84 665 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 FUT8Q9BYC5 575 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CLCA3PQ9Y6N3 262 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 MYH14Q7Z406 1995 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ABLIM1O14639 778 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 RGS10O43665 173 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 C1RP00736 705 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PRH1P02810 166 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 TFEBP19484 476 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 IL12AP29459 219 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CSTF2P33240 577 aaKnown RBP eCLIP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 GDI2P50395 445 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 IL18Q14116 193 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 WDR93Q6P2C0 686 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CERS6Q6ZMG9 384 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 TMEM145Q8NBT3 493 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 DNAAF1Q8NEP3 725 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 TSTD1Q8NFU3 115 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 C2orf15Q8WU43 125 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF75CPQ92670 426 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PRCCQ92733 491 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PLD4Q96BZ4 506 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ART5Q96L15 291 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 DNAJC5Q9H3Z4 198 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ZCCHC17Q9NP64 241 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 PCDHB16Q9NRJ7 776 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 MIOSQ9NXC5 875 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 FADS2P1A8MWK0 482 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 L7N2F9 121 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 OR1I1O60431 355 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 SLC22A3O75751 556 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 AKAP3O75969 853 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 TM7SF2O76062 418 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 RB1P06400 928 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 TACSTD2P09758 323 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 VAMP2P63027 116 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 VLDLRP98155 873 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 DUSP4Q13115 394 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 CRY2Q49AN0 593 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 DCST1Q5T197 706 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 FAM35AQ86V20 835 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 ARMC10Q8N2F6 343 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 LRRC52Q8N7C0 313 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 OR52K1Q8NGK4 314 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 GIPC3Q8TF64 312 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 STYXQ8WUJ0 223 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 LGR4Q9BXB1 951 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 WDR12Q9GZL7 423 aaKnown RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 FBXO6Q9NRD1 293 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-204ENST00000423058 EFR3BQ9Y2G0 817 aa6.82□□□□□ -1.32
SCN1A-204ENST00000423058 HCN1O60741 890 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 METTL18O95568 372 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 AGR2O95994 175 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF20P17024 532 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 SEC13P55735 322 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 GAD2Q05329 585 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CRHR2Q13324 411 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 DGKZQ13574 1117 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TMEM44Q2T9K0 475 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 GCNT6Q5T4J0 391 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 NAIF1Q69YI7 327 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 SLC24A5Q71RS6 500 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 SATL1Q86VE3 508 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ZSWIM2Q8NEG5 633 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CAVIN3Q969G5 261 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 DGAT2Q96PD7 388 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 DPYSL5Q9BPU6 564 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 FAM105AQ9NUU6 356 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF490Q9ULM2 529 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TBC1D24Q9ULP9 559 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ILVBLA1L0T0 632 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TTC34A8MYJ7 566 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CLDN9O95484 217 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 POP4O95707 220 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 MATKP42679 507 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 EIF5AP63241 154 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CACNG1Q06432 222 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TAF5Q15542 800 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF311Q5JNZ3 666 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 EOGTQ5NDL2 527 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 MED27Q6P2C8 311 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 SHQ1Q6PI26 577 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 FAM183BPQ6ZVS7 135 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms