RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 ZDHHC3Q9NYG2 299 aa13.93□□□□□ -0.18
GPNMB-203ENST00000409458 TRMT6Q9UJA5 497 aaKnown RBP13.93□□□□□ -0.18
GPNMB-203ENST00000409458 IKZF3Q9UKT9 509 aa13.93□□□□□ -0.18
GPNMB-203ENST00000409458 H0Y858 1186 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 PSMD11O00231 422 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 EBAG9O00559 213 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 NPC1O15118 1278 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 RBP1P09455 135 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 SLC1A6P48664 564 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 B4GALNT1Q00973 533 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 ACOX1Q15067 660 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 C2orf27AQ580R0 203 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 LIPMQ5VYY2 423 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 MACC1Q6ZN28 852 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 ISCA2Q86U28 154 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 RALGPS2Q86X27 583 aaPredicted RBP13.92□□□□□ -0.18
GPNMB-203ENST00000409458 CPNE9Q8IYJ1 553 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 TRAM1L1Q8N609 369 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 RFWD2Q8NHY2 731 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 PPM1EQ8WY54 764 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 DNASE1L2Q92874 299 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 COQ10AQ96MF6 247 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 SORT1Q99523 831 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 CDX2Q99626 313 aaPredicted RBP13.92□□□□□ -0.18
GPNMB-203ENST00000409458 COPS8Q99627 209 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 RIOK2Q9BVS4 552 aaKnown RBP13.92□□□□□ -0.18
GPNMB-203ENST00000409458 PHF7Q9BWX1 381 aaPredicted RBP13.92□□□□□ -0.18
GPNMB-203ENST00000409458 HDAC8Q9BY41 377 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 RSPH9Q9H1X1 276 aaPredicted RBP13.92□□□□□ -0.18
GPNMB-203ENST00000409458 SYTL2Q9HCH5 934 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 SARS2Q9NP81 518 aaKnown RBP13.92□□□□□ -0.18
GPNMB-203ENST00000409458 ACSS2Q9NR19 701 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 RAD18Q9NS91 495 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 THAP1Q9NVV9 213 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 COQ6Q9Y2Z9 468 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 PRUNE2Q8WUY3 3088 aa13.92□□□□□ -0.18
GPNMB-203ENST00000409458 IGLV3-16A0A075B6K0 115 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 RGSL1A5PLK6 1076 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 NEMP2A6NFY4 417 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 FADS2P1A8MWK0 482 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 MID1O15344 667 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 NARSO43776 548 aaKnown RBP13.91□□□□□ -0.18
GPNMB-203ENST00000409458 TRIM13O60858 407 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 TSPAN12O95859 305 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 ITGB6P18564 788 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 DRD3P35462 400 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 SATB1Q01826 763 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 CNTN1Q12860 1018 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 OR4D1Q15615 310 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 CST6Q15828 149 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 TMEM196Q5HYL7 178 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 GPRC6AQ5T6X5 926 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 PIP5KL1Q5T9C9 394 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 FAM46CQ5VWP2 391 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 KIAA1211LQ6NV74 962 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 AADATQ8N5Z0 425 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 C10orf82Q8WW14 230 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 MOCOSQ96EN8 888 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 LINGO1Q96FE5 620 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 DTD2Q96FN9 168 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 GATA5Q9BWX5 397 aaPredicted RBP13.91□□□□□ -0.18
GPNMB-203ENST00000409458 DERL2Q9GZP9 239 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 KLHL14Q9P2G3 628 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 A8MT66 165 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 WNT9AO14904 365 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 SYNCRIPO60506 623 aaKnown RBP13.91□□□□□ -0.18
GPNMB-203ENST00000409458 H2AFYO75367 372 aaKnown RBP13.91□□□□□ -0.18
GPNMB-203ENST00000409458 TGDSO95455 350 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 TROVE2P10155 538 aaKnown RBP eCLIP13.91□□□□□ -0.18
GPNMB-203ENST00000409458 C6P13671 934 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 ATP5F1P24539 256 aaPredicted RBP13.91□□□□□ -0.18
GPNMB-203ENST00000409458 GRK2P25098 689 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 NSG1P42857 185 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 KCNC1P48547 511 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 ABCE1P61221 599 aaKnown RBP13.91□□□□□ -0.18
GPNMB-203ENST00000409458 E2F5Q15329 346 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 ZNF284Q2VY69 593 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 TMEM52BQ4KMG9 183 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 UGT3A1Q6NUS8 523 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 C6orf89Q6UWU4 347 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 NRSN1Q8IZ57 195 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 PLCD3Q8N3E9 789 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 NKAPQ8N5F7 415 aaKnown RBP13.91□□□□□ -0.18
GPNMB-203ENST00000409458 ANKS4BQ8N8V4 417 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 DTX3LQ8TDB6 740 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 SREK1Q8WXA9 508 aaKnown RBP13.91□□□□□ -0.18
GPNMB-203ENST00000409458 EXT2Q93063 718 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 GABRG3Q99928 467 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 ZSCAN5AQ9BUG6 496 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 CDH19Q9H159 772 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 C8orf33Q9H7E9 229 aaPredicted RBP13.91□□□□□ -0.18
GPNMB-203ENST00000409458 MARCOQ9UEW3 520 aaPredicted RBP13.91□□□□□ -0.18
GPNMB-203ENST00000409458 ARL2BPQ9Y2Y0 163 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 DHRS7Q9Y394 339 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 FADS3Q9Y5Q0 445 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 ATG2BQ96BY7 2078 aa13.91□□□□□ -0.18
GPNMB-203ENST00000409458 NPEPPSL1A6NEC2 478 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 TMEM114B3SHH9 223 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 NEMP1O14524 444 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 MMP20O60882 483 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms