RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 VPS35Q96QK1 796 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 B3GNT4Q9C0J1 378 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 BPIFA1Q9NP55 256 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 PRAMEF33A0A0G2JMD5 474 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 OR5K4A6NMS3 321 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 EIF4E1BA6NMX2 242 aaKnown RBP21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 F5H423 210 aaPredicted RBP21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 H7C0C1 242 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 TK2O00142 265 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 PJA2O43164 708 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 SNX2O60749 519 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 PRAMEF10O60809 474 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 THRAP10827 490 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 HLA-DPA1P20036 260 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 RBL1P28749 1068 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 PTPN7P35236 360 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 CHRNA4P43681 627 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 TNNT3P45378 269 aaPredicted RBP21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 ATP5OP48047 213 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 VAV2P52735 878 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 MAPK10P53779 464 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 HHEXQ03014 270 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 SLC1A5Q15758 541 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 CCDC181Q5TID7 509 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 TMEM71Q6P5X7 295 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 RCBTB1Q8NDN9 531 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 ACRBPQ8NEB7 543 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 IPMKQ8NFU5 416 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 ACTL9Q8TC94 416 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 DTX3LQ8TDB6 740 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 SH3KBP1Q96B97 665 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 OSBPL8Q9BZF1 889 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 STN1Q9H668 368 aaKnown RBP21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 KLC4Q9NSK0 619 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 HACD3Q9P035 362 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 RSPH14Q9UHP6 348 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 TMPRSS11EQ9UL52 423 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 ATRXP46100 2492 aa21.43■■□□□ 1.02
CCDC28B-201ENST00000373602 KIR2DS5A0A0G2JLQ3 304 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 A0A0G2JNG1 304 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 CCDC66A2RUB6 948 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 C9orf172C9J069 976 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 K7ENP7 123 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 KIR2DS3K7RE56 304 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 VEGFDO43915 354 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 CCL4P13236 92 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 RWDD2BP57060 319 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 OTUD4Q01804 1114 aaKnown RBP21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 RHDQ02161 417 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 KIR2DS5Q14953 304 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 ATP13A5Q4VNC0 1218 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 ZDHHC20Q5W0Z9 365 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 INO80CQ6PI98 192 aaPredicted RBP21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 CRTC3Q6UUV7 619 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 SLC9B2Q86UD5 537 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 LRRC57Q8N9N7 239 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 OR10G6Q8NH81 332 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 SLC39A7Q92504 469 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 CCNL2Q96S94 520 aaPredicted RBP21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 C10orf88Q9H8K7 445 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 PRDM8Q9NQV8 689 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 FOXJ2Q9P0K8 574 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 IL17CQ9P0M4 197 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 TMEM9Q9P0T7 183 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 PDP2Q9P2J9 529 aa21.42■■□□□ 1.02
CCDC28B-201ENST00000373602 AHCTF1Q8WYP5 2266 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 KMOO15229 486 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 DUX1O43812 170 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 MTX2O75431 263 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 LIPCP11150 499 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 NFATC2Q13469 925 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 KHDC1Q4VXA5 237 aaKnown RBP21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 PCSK4Q6UW60 755 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 CCDC81Q6ZN84 652 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 LRRTM4Q86VH4 590 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 AVL9Q8NBF6 648 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 AHCYL2Q96HN2 611 aaKnown RBP21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 TIMM29Q9BSF4 260 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 GBA3Q9H227 469 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 IL26Q9NPH9 171 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 SLC23A2Q9UGH3 650 aa21.41■■□□□ 1.02
CCDC28B-201ENST00000373602 LOC400499M0QZD8 3231 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 GRID2IPA4D2P6 1211 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 PRR19A6NJB7 356 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 ERVH48-1M5A8F1 160 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 CDK14O94921 469 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 FGF3P11487 239 aaPredicted RBP21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 ZNF7P17097 686 aaPredicted RBP21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 MPSTP25325 297 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 CD82P27701 267 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 SPAM1P38567 509 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 TGIF1Q15583 401 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 INSCQ1MX18 579 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 TMEM164Q5U3C3 297 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 ITPRIPL1Q6GPH6 555 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 GLT6D1Q7Z4J2 308 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 TMEM139Q8IV31 216 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 ZNF547Q8IVP9 402 aa21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 CDKL3Q8IVW4 592 aaPredicted RBP21.4■■□□□ 1.02
CCDC28B-201ENST00000373602 AGBL5Q8NDL9 886 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms