RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 SOX17Q9H6I2 414 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-203ENST00000354674 ZNF696Q9H7X3 374 aa10.06□□□□□ -0.8
SYNE1-203ENST00000354674 COQ10BQ9H8M1 238 aa10.06□□□□□ -0.8
SYNE1-203ENST00000354674 POLR1BQ9H9Y6 1135 aa10.06□□□□□ -0.8
SYNE1-203ENST00000354674 EIF2B3Q9NR50 452 aaKnown RBP10.06□□□□□ -0.8
SYNE1-203ENST00000354674 RAB6BQ9NRW1 208 aa10.06□□□□□ -0.8
SYNE1-203ENST00000354674 TDP1Q9NUW8 608 aa10.06□□□□□ -0.8
SYNE1-203ENST00000354674 ZNHIT2Q9UHR6 403 aa10.06□□□□□ -0.8
SYNE1-203ENST00000354674 DNAJC16Q9Y2G8 782 aa10.06□□□□□ -0.8
SYNE1-203ENST00000354674 REV3LO60673 3130 aa10.06□□□□□ -0.8
SYNE1-203ENST00000354674 A0A1W2PPC1 479 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 ILVBLA1L0T0 632 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 E7ESA3 106 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 KCNK1O00180 336 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 DENRO43583 198 aaKnown RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 TPST1O60507 370 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 RAMP2O60895 175 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 IFI30P13284 250 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 AVPR1AP37288 418 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 ACADVLP49748 655 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 GPX6P59796 221 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 FLOT2Q14254 428 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 POLD3Q15054 466 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 TCEAL5Q5H9L2 206 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 CXorf57Q6NSI4 855 aaKnown RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 GPR149Q86SP6 731 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 GATAD2AQ86YP4 633 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 BBS7Q8IWZ6 715 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 CNTD1Q8N815 330 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 HJURPQ8NCD3 748 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 OR52K2Q8NGK3 314 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 ITFG1Q8TB96 612 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 DMRTB1Q96MA1 342 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 BTBD9Q96Q07 612 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 C2orf49Q9BVC5 232 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 B3GNT4Q9C0J1 378 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 SMG9Q9H0W8 520 aaKnown RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 ZNF576Q9H609 170 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 PDFQ9HBH1 243 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 DDX28Q9NUL7 540 aaKnown RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 IPO11Q9UI26 975 aaKnown RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 ERGIC3Q9Y282 383 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 MYRFQ9Y2G1 1151 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 NUP205Q92621 2012 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 ARHGAP33O14559 1287 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 TRDMT1O14717 391 aaKnown RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 SNPHO15079 494 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 ABCB1P08183 1280 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 ENO3P13929 434 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 XRCC1P18887 633 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 SEPHS1P49903 392 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 LSM3P62310 102 aaKnown RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 BASP1P80723 227 aaKnown RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 IL10RBQ08334 325 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 ADAM15Q13444 863 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 INAVAQ3KP66 663 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 OGFRL1Q5TC84 451 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 ANKRD54Q6NXT1 300 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 SYCE2Q6PIF2 218 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 CHRDL2Q6WN34 429 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 MMAAQ8IVH4 418 aaKnown RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 SNX19Q92543 992 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 ACE2Q9BYF1 805 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 FRMD8Q9BZ67 464 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 RPF2Q9H7B2 306 aaKnown RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 SCHIP1Q9P0W5 487 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-203ENST00000354674 SNX13Q9Y5W8 968 aa10.05□□□□□ -0.8
SYNE1-203ENST00000354674 TMEM265A0A087WTH1 108 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 GOLGA8QA0A0J9YX86 632 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 GOLGA8OA6NCC3 632 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 GOLGA8NF8WBI6 632 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ZBTB24O43167 697 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 MAN1A2O60476 641 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 H6PDO95479 791 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 PRAMEF12O95522 483 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 POU3F3P20264 500 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 CES1P23141 567 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 IDUAP35475 653 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 MAGEA3P43357 314 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 NUDT2P50583 147 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 MSS51Q4VC12 460 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 MTX3Q5HYI7 312 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 C16orf46Q6P387 395 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 EGLN2Q96KS0 407 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 TBATAQ96M53 351 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 CDRT15Q96T59 188 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 CCDC106Q9BWC9 280 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 SEPT10Q9P0V9 454 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 MRPS23Q9Y3D9 190 aaKnown RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ACTL7BQ9Y614 415 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 CEP290O15078 2479 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 TTC34A8MYJ7 566 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 J3KR12 359 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 CLOCKO15516 846 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 AP1G1O43747 822 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 TSPAN3O60637 253 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 PRAMEF11O60813 436 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 EEF1B2P24534 225 aaKnown RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 CXCR2P25025 360 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms