RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 DDHD1Q8NEL9 900 aa18.96■□□□□ 0.63
SYNE4-202ENST00000340477 OR13C4Q8NGS5 318 aa18.96■□□□□ 0.63
SYNE4-202ENST00000340477 STYXQ8WUJ0 223 aa18.96■□□□□ 0.63
SYNE4-202ENST00000340477 OSGEPL1Q9H4B0 414 aa18.96■□□□□ 0.63
SYNE4-202ENST00000340477 SPATS2LQ9NUQ6 558 aaKnown RBP18.96■□□□□ 0.63
SYNE4-202ENST00000340477 PIH1D1Q9NWS0 290 aaKnown RBP18.96■□□□□ 0.63
SYNE4-202ENST00000340477 KCTD3Q9Y597 815 aa18.96■□□□□ 0.63
SYNE4-202ENST00000340477 RHPN2P1A8MT19 583 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 CFAP99D6REC4 459 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 LDB2O43679 373 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 NUDT21O43809 227 aaKnown RBP18.95■□□□□ 0.62
SYNE4-202ENST00000340477 NOBOXO60393 691 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 UGT1A9O60656 530 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 PHF2O75151 1096 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 MT-CO3P00414 261 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 UGT1A6P19224 532 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 UGT1A1P22309 533 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 UGT1A4P22310 534 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 UGT1A3P35503 534 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 UGT1A5P35504 534 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 SARNPP82979 210 aaKnown RBP18.95■□□□□ 0.62
SYNE4-202ENST00000340477 TMEM115Q12893 351 aaPredicted RBP18.95■□□□□ 0.62
SYNE4-202ENST00000340477 NFATC2Q13469 925 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 SPIDRQ14159 915 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 SKIDA1Q1XH10 827 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 PLA2G4EQ3MJ16 856 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 PERM1Q5SV97 790 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 GPRC6AQ5T6X5 926 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 CCDC137Q6PK04 289 aaKnown RBP18.95■□□□□ 0.62
SYNE4-202ENST00000340477 NLRP9Q7RTR0 991 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 AVL9Q8NBF6 648 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 PPHLN1Q8NEY8 458 aaKnown RBP18.95■□□□□ 0.62
SYNE4-202ENST00000340477 HEXDCQ8WVB3 486 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 DCUN1D1Q96GG9 259 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 ZNF514Q96K75 400 aaPredicted RBP18.95■□□□□ 0.62
SYNE4-202ENST00000340477 DNAJC1Q96KC8 554 aaKnown RBP18.95■□□□□ 0.62
SYNE4-202ENST00000340477 TIMM29Q9BSF4 260 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 UGT1A7Q9HAW7 530 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 UGT1A10Q9HAW8 530 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 UGT1A8Q9HAW9 530 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 NLE1Q9NVX2 485 aaPredicted RBP18.95■□□□□ 0.62
SYNE4-202ENST00000340477 KCNK6Q9Y257 313 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 PLEKHM1Q9Y4G2 1056 aa18.95■□□□□ 0.62
SYNE4-202ENST00000340477 PLXNB3Q9ULL4 1909 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 FAM149AA5PLN7 773 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 CHUKO15111 745 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 SNX2O60749 519 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 TCEA3O75764 348 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 KRT14P02533 472 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 PNLIPP16233 465 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 MC4RP32245 332 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 COILP38432 576 aaPredicted RBP18.94■□□□□ 0.62
SYNE4-202ENST00000340477 FNTAP49354 379 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 CDK16Q00536 496 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 MSLNQ13421 630 aaPredicted RBP18.94■□□□□ 0.62
SYNE4-202ENST00000340477 HLTFQ14527 1009 aaKnown RBP eCLIP18.94■□□□□ 0.62
SYNE4-202ENST00000340477 CYP1B1Q16678 543 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 GPR33Q49SQ1 333 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 UNQ6494/PRO21346Q6UXR6 183 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 RBM44Q6ZP01 1051 aaKnown RBP18.94■□□□□ 0.62
SYNE4-202ENST00000340477 SNX20Q7Z614 316 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 CACTIN-AS1Q8N1I8 211 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.94■□□□□ 0.625e-7■■■■□ 23.5
SYNE4-202ENST00000340477 KLC4Q9NSK0 619 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 LRIT1Q9P2V4 623 aa18.94■□□□□ 0.62
SYNE4-202ENST00000340477 GAPDHSO14556 408 aaPredicted RBP18.93■□□□□ 0.62
SYNE4-202ENST00000340477 ECEL1O95672 775 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 ZNF7P17097 686 aaPredicted RBP18.93■□□□□ 0.62
SYNE4-202ENST00000340477 TPSB2P20231 275 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 VPS41P49754 854 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 MAZP56270 477 aaKnown RBP18.93■□□□□ 0.62
SYNE4-202ENST00000340477 GPS1Q13098 491 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 TRIP13Q15645 432 aaPredicted RBP18.93■□□□□ 0.62
SYNE4-202ENST00000340477 TPSAB1Q15661 275 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 ZRANB3Q5FWF4 1079 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 CCNJLQ8IV13 435 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 GFM1Q96RP9 751 aaKnown RBP18.93■□□□□ 0.62
SYNE4-202ENST00000340477 RANBP9Q96S59 729 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 CASS4Q9NQ75 786 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 SMARCAL1Q9NZC9 954 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 BFARQ9NZS9 450 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 TMPRSS11EQ9UL52 423 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 SAR1BQ9Y6B6 198 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 RNF215Q9Y6U7 377 aa18.93■□□□□ 0.62
SYNE4-202ENST00000340477 RP1P56715 2156 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 ASXL3Q9C0F0 2248 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.92■□□□□ 0.62
SYNE4-202ENST00000340477 TMEM8BA6NDV4 472 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 OR5K4A6NMS3 321 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 H7C0S8 307 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 ZNF185O15231 689 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 GPR39O43194 453 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 KCNJ13O60928 360 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 RPLP0P05388 317 aaKnown RBP18.92■□□□□ 0.62
SYNE4-202ENST00000340477 ADRA1DP25100 572 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 PAFAH1B1P43034 410 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 PPM1FP49593 454 aaPredicted RBP18.92■□□□□ 0.62
SYNE4-202ENST00000340477 CLCNKAP51800 687 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 CLDN6P56747 220 aa18.92■□□□□ 0.62
SYNE4-202ENST00000340477 XIAPP98170 497 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms