RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SMIM10L2AP0DMW4 78 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 SMIM10L2BP0DMW5 78 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 ARF4P18085 180 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 ALDH9A1P49189 494 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 HNRNPDQ14103 355 aaKnown RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 ACSBG2Q5FVE4 666 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 C16orf62Q7Z3J2 963 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 ADAM32Q8TC27 787 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 RIT1Q92963 219 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 PCDHGB1Q9Y5G3 927 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 PITPNAQ00169 270 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 SGCGQ13326 291 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 SPPL2BQ8TCT7 592 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 SPATA17Q96L03 361 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 PRICKLE1Q96MT3 831 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 CIB1Q99828 191 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 KAT8Q9H7Z6 458 aaKnown RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 TRBC1P01850 177 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 ALDH4A1P30038 563 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 HNF4AP41235 474 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 GLYATQ6IB77 296 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 PAMR1Q6UXH9 720 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 HEATR4Q86WZ0 1026 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 DENND6AQ8IWF6 608 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 TBCDQ9BTW9 1192 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 KIFC1Q9BW19 673 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 LAMB2P55268 1798 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 DLEC1Q9Y238 1755 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 KERAO60938 352 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 HIST1H2ABP04908 130 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 LINC00032P0C843 101 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 CRADDP78560 199 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 NDUFA9Q16795 377 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 C6orf52Q5T4I8 152 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 CAPN13Q6MZZ7 669 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 CHSY3Q70JA7 882 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 CYS1Q717R9 158 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 HIST3H2AQ7L7L0 130 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 SNIP1Q8TAD8 396 aaKnown RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 ELMO1Q92556 727 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 HIST1H2ACQ93077 130 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 MYO19Q96H55 970 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 GPC6Q9Y625 555 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 LSM1O15116 133 aaKnown RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 CYP2B6P20813 491 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 TAF1AQ15573 450 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 ADAMTS10Q9H324 1103 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 ACTR3BQ9P1U1 418 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 SYNDIG1LA6NDD5 238 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 PEX11AO75192 247 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 FGBP02675 491 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 HSD17B2P37059 387 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 IL10RBQ08334 325 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 DUSP28Q4G0W2 176 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 KCTD21Q4G0X4 260 aa10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 MRTO4Q9UKD2 239 aaKnown RBP10.22□□□□□ -0.77
CCDC88A-202ENST00000336838 CCNKO75909 580 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 CTSKP43235 329 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 GCNT6Q5T4J0 391 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 C11orf96Q7Z7L8 435 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 CEP295NLQ96MC4 621 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 ACBD6Q9BR61 282 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 GBA2Q9HCG7 927 aaPredicted RBP10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 ZBTB26Q9HCK0 441 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 ZNF282Q9UDV7 671 aaPredicted RBP10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 SLC7A8Q9UHI5 535 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 PENKP01210 267 aaPredicted RBP10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 IFNW1P05000 195 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 PABPC4LP0CB38 370 aaKnown RBP10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 MPSTP25325 297 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 AMIGO2Q86SJ2 522 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 OR5K1Q8NHB7 308 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 DNAJC11Q9NVH1 559 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 CMTM6Q9NX76 183 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 TMEM150BA6NC51 233 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 OR10H3O60404 316 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 PRKCHP24723 683 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 TMBIM6P55061 237 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 CNTN2Q02246 1040 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 DCAF12L1Q5VU92 463 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 PPCDCQ96CD2 204 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 C8orf48Q96LL4 319 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 POPDC3Q9HBV1 291 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 INTS7Q9NVH2 962 aaKnown RBP10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 COQ6Q9Y2Z9 468 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 POLR3HQ9Y535 204 aaPredicted RBP10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 PLSCR1O15162 318 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 AIREO43918 545 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 MFSD11O43934 449 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 RGS1Q08116 209 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 KIAA0319LQ8IZA0 1049 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 TMIEQ8NEW7 156 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 ANKRD49Q8WVL7 239 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 ZUFSPQ96AP4 578 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 CAMK1GQ96NX5 476 aa10.21□□□□□ -0.77
CCDC88A-202ENST00000336838 WNT7AO00755 349 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 TBX10O75333 385 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 MT-CO1P00395 513 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 ITGA7Q13683 1181 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 GK3PQ14409 553 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms