RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 HDAC2Q92769 488 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 C12orf42Q96LP6 360 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 TEKT5Q96M29 485 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 PPM1MQ96MI6 270 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 R3HDMLQ9H3Y0 253 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 ACAD9Q9H845 621 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 POLG2Q9UHN1 485 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 ASNA1O43681 348 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 SSX4O60224 188 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 VTNP04004 478 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 CDKN2DP55273 166 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 BST2Q10589 180 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 E2F2Q14209 437 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 NKG7Q16617 165 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 PCID2Q5JVF3 399 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 AGAP9Q5VTM2 703 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 FAM160B1Q5W0V3 765 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 DESI1Q6ICB0 168 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 PRMT9Q6P2P2 845 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 ENPP6Q6UWR7 440 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 DTWD1Q8N5C7 304 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 ANKK1Q8NFD2 765 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 OSCP1Q8WVF1 389 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 EMILIN2Q9BXX0 1053 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 GJD2Q9UKL4 321 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 MYLKQ15746 1914 aa13.36□□□□□ -0.27
CCDC88C-201ENST00000331194 ZNF646O15015 1829 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 A0A087X1B8 175 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 C16orf96A6NNT2 1141 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 G3V2T6 193 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 SNX2O60749 519 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 PSMB9P28065 219 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 ILF2Q12905 390 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 LAPTM4AQ15012 233 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 PCSK7Q16549 785 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 DGUOKQ16854 277 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 NAPEPLDQ6IQ20 393 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 DENND5AQ6IQ26 1287 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 CLYBLQ8N0X4 340 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 ELMOD1Q8N336 334 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 CELF2-AS1Q8N7Q2 184 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 CALML6Q8TD86 181 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 COPS5Q92905 334 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 CRYL1Q9Y2S2 319 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 UGT2A1Q9Y4X1 527 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 OR51F1A6NGY5 319 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 TNFRSF10AO00220 468 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 GOT2P00505 430 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 CHRNA1P02708 482 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 ADRA1BP35368 520 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 NDUFA5Q16718 116 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 PFKFB4Q16877 469 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 RSBN1Q5VWQ0 802 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 SPESP1Q6UW49 350 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 TMEM179BQ7Z7N9 219 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 ISCA2Q86U28 154 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 ZDHHC17Q8IUH5 632 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 PTGR2Q8N8N7 351 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 SLC43A3Q8NBI5 491 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 MINDY2Q8NBR6 621 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 C2CD4AQ8NCU7 369 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 DYNC2LI1Q8TCX1 351 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 ATL1Q8WXF7 558 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 TP53INP1Q96A56 240 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 NSMCE2Q96MF7 247 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 FEM1AQ9BSK4 669 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 DSN1Q9H410 356 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 NSMCE4AQ9NXX6 385 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 RCOR3Q9P2K3 495 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 SYCE1LA8MT33 242 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 UBXN8O00124 270 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 DFFAO00273 331 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 HOXC11O43248 304 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 CD6P30203 668 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 PHC1P78364 1004 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 SNX17Q15036 470 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 LAIR1Q6GTX8 287 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 TMC5Q6UXY8 1006 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 C11orf74Q86VG3 221 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 PTRH1Q86Y79 214 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 GATAD2AQ86YP4 633 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 ZDHHC13Q8IUH4 622 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 EMID1Q96A84 441 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 TXNDC15Q96J42 360 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 TBL1YQ9BQ87 522 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 ZNF408Q9H9D4 720 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 FBXO8Q9NRD0 319 aa13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 SDR39U1Q9NRG7 319 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-201ENST00000331194 HS6ST1O60243 411 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 TBC1D4O60343 1298 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 MITFO75030 526 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 MFN2O95140 757 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 GABARAPO95166 117 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 NAT2P11245 290 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 CYP4B1P13584 511 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 IL12AP29459 219 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 PRDX3P30048 256 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 CASP3P42574 277 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 ACADSBP45954 432 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms