RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 ARPINQ7Z6K5 226 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 ZDHHC13Q8IUH4 622 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 ZNF354BQ96LW1 612 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 UGT1A7Q9HAW7 530 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 UGT1A10Q9HAW8 530 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 UGT1A8Q9HAW9 530 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 H3BQ06 376 aaPredicted RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 FSCN2O14926 492 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 NEK2P51955 445 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 MAPK12P53778 367 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 BEND5Q7L4P6 421 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 ITCHQ96J02 903 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 KCNS3Q9BQ31 491 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 R3HDM2Q9Y2K5 976 aaKnown RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 FAM237BA0A1B0GVD1 139 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 TRAFD1O14545 582 aaPredicted RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 AGXTP21549 392 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 PLA2G16P53816 162 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 NRG1Q02297 640 aaPredicted RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 ANXA8L1Q5VT79 327 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 MED27Q6P2C8 311 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 FOXR2Q6PJQ5 311 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 EIF3MQ7L2H7 374 aaKnown RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 UNC5BQ8IZJ1 945 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 ZNF276Q8N554 614 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 LRRN4CLQ8ND94 238 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 NXNL1Q96CM4 212 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 ZNF607Q96SK3 696 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 P2RY13Q9BPV8 354 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 IL12BP29460 328 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 GPR17Q13304 367 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 TAF1AQ15573 450 aaPredicted RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 ZNF784Q8NCA9 323 aaPredicted RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 SRFBP1Q8NEF9 429 aaKnown RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 MIOSQ9NXC5 875 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 CORO2BQ9UQ03 480 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 STON1Q9Y6Q2 735 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 BTAF1O14981 1849 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 ME2P23368 584 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 CYP4F3Q08477 520 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 WDR45BQ5MNZ6 344 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 HFE2Q6ZVN8 426 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 ACMSDQ8TDX5 336 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 XAGE5Q8WWM1 108 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 C5orf34Q96MH7 638 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 SGIP1Q9BQI5 828 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 RIOK2Q9BVS4 552 aaKnown RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 NOL11Q9H8H0 719 aaKnown RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 PNO1Q9NRX1 252 aaKnown RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 CNOT6Q9ULM6 557 aaKnown RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 CACNA1SQ13698 1873 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 RECQL5O94762 991 aaPredicted RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 TOP3BO95985 862 aaKnown RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 KCNE1P15382 129 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 EPHA3P29320 983 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 ACVRL1P37023 503 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 OSTM1Q86WC4 334 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 UBR7Q8N806 425 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 PHF10Q8WUB8 498 aaKnown RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 SIKE1Q9BRV8 207 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 C10orf71Q711Q0 1435 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 PTGES3LE9PB15 166 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 SIN3BO75182 1162 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 SERPINB7O75635 380 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 CLDN9O95484 217 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 VARSP26640 1264 aaKnown RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 SEPHS1P49903 392 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 TPRG1Q6ZUI0 275 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 NEK10Q6ZWH5 1172 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 IRF2BP1Q8IU81 584 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 ARMC8Q8IUR7 673 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 CPNE9Q8IYJ1 553 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 MBOAT7Q96N66 472 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 SEMA6AQ9H2E6 1030 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 LEF1Q9UJU2 399 aaPredicted RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 TIMM22Q9Y584 194 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 MYH15Q9Y2K3 1946 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 HAPLN1P10915 354 aaPredicted RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 ARRB1P49407 418 aaPredicted RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 PIGKQ92643 395 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 CDADC1Q9BWV3 514 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 BCL2L14Q9BZR8 327 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 NEUROD4Q9HD90 331 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 ERVK-5Q9HDB9 667 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 TULP2O00295 520 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 CCR3P51677 355 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 SQLEQ14534 574 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 RFTN1Q14699 578 aaPredicted RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 SERINC5Q86VE9 423 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 TSEN2Q8NCE0 465 aaKnown RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 FNDC11Q9BVV2 318 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 ENOPH1Q9UHY7 261 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 LRP6O75581 1613 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 A8MUA0 341 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 JMJD7P0C870 316 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 IDH2P48735 452 aaKnown RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 C1QTNF8P60827 252 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 NAA20P61599 178 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 STXBP1P61764 594 aaKnown RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 PTCD2Q8WV60 388 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms