RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TBCDQ9BTW9 1192 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 LATS2Q9NRM7 1088 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 PRRG1O14668 218 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 PKMP14618 531 aaKnown RBP16.49■□□□□ 0.23
VPS54-201ENST00000272322 LPOP22079 712 aaPredicted RBP16.49■□□□□ 0.23
VPS54-201ENST00000272322 CWF19L1Q69YN2 538 aaKnown RBP16.49■□□□□ 0.23
VPS54-201ENST00000272322 PTRHD1Q6GMV3 140 aaKnown RBP16.49■□□□□ 0.23
VPS54-201ENST00000272322 TRAF7Q6Q0C0 670 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 CASD1Q96PB1 797 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 NSUN3Q9H649 340 aaKnown RBP16.49■□□□□ 0.23
VPS54-201ENST00000272322 TMEM161AQ9NX61 479 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 DRGXA6NNA5 263 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 VPS26AO75436 327 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 ZNF189O75820 626 aaPredicted RBP16.49■□□□□ 0.23
VPS54-201ENST00000272322 STC2O76061 302 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 PAPSS2O95340 614 aaPredicted RBP16.49■□□□□ 0.23
VPS54-201ENST00000272322 CAPN1P07384 714 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 HMGCS1Q01581 520 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 LCP2Q13094 533 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 NR6A1Q15406 480 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 LCA5Q86VQ0 697 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 SLC22A15Q8IZD6 547 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 PBXIP1Q96AQ6 731 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 VPS50Q96JG6 964 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 TRAPPC9Q96Q05 1148 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 RNF11Q9Y3C5 154 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 SLC30A1Q9Y6M5 507 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 KCNK10P57789 538 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 YBEYP58557 167 aaPredicted RBP16.48■□□□□ 0.23
VPS54-201ENST00000272322 POM121L1PQ3SYA9 428 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 DET1Q7L5Y6 550 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 ADCY4Q8NFM4 1077 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 MAGEE2Q8TD90 523 aaPredicted RBP16.48■□□□□ 0.23
VPS54-201ENST00000272322 LRRC58Q96CX6 371 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 PPP1R2P1Q96PQ5 205 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 PLEKHG4BQ96PX9 1271 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 PSKH2Q96QS6 385 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 CIPCQ9C0C6 399 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 OLA1Q9NTK5 396 aaKnown RBP16.48■□□□□ 0.23
VPS54-201ENST00000272322 OAZ3Q9UMX2 235 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 GREB1Q4ZG55 1949 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 DOCK6Q96HP0 2047 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 ZNF840PA6NDX5 716 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 SYN3O14994 580 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 HSPA8P11142 646 aaKnown RBP16.48■□□□□ 0.23
VPS54-201ENST00000272322 INHBEP58166 350 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 IL2P60568 153 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 PRKCQQ04759 706 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 HERC3Q15034 1050 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 KLHDC8BQ8IXV7 354 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 RNF145Q96MT1 663 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 BIRC8Q96P09 236 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 C17orf80Q9BSJ5 609 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 TDRD1Q9BXT4 1180 aaKnown RBP16.48■□□□□ 0.23
VPS54-201ENST00000272322 SYTL2Q9HCH5 934 aa16.48■□□□□ 0.23
VPS54-201ENST00000272322 FARSBQ9NSD9 589 aaKnown RBP16.48■□□□□ 0.23
VPS54-201ENST00000272322 DHRS12A0PJE2 317 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 TRIM24O15164 1050 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 SLC6A2P23975 617 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 POLD2P49005 469 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 HTRA3P83110 453 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 ARF5P84085 180 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 ROR2Q01974 943 aaKnown RBP16.47■□□□□ 0.23
VPS54-201ENST00000272322 CDH18Q13634 790 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 ARMC3Q5W041 872 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 DDI1Q8WTU0 396 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 EID2BQ96D98 161 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 FBXL20Q96IG2 436 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 BTBD9Q96Q07 612 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 CLEC4EQ9ULY5 219 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 IGHA2P01877 340 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 CYBBP04839 570 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 INHAP05111 366 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 HSPA1AP0DMV8 641 aaKnown RBP16.47■□□□□ 0.23
VPS54-201ENST00000272322 HSPA1BP0DMV9 641 aaKnown RBP16.47■□□□□ 0.23
VPS54-201ENST00000272322 PCSK6P29122 969 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 HTR7P34969 479 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 GPNMBQ14956 572 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 TMEM259Q4ZIN3 620 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 LETMD1Q6P1Q0 360 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 GFM2Q969S9 779 aaKnown RBP16.47■□□□□ 0.23
VPS54-201ENST00000272322 TRPM5Q9NZQ8 1165 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 NFKBIAP25963 317 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 PTGR1Q14914 329 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 CTSL3PQ5NE16 218 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 KLHDC10Q6PID8 442 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 DCUN1D5Q9BTE7 237 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 PDFQ9HBH1 243 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 LTB4R2Q9NPC1 389 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 MYO16Q9Y6X6 1858 aa16.47■□□□□ 0.23
VPS54-201ENST00000272322 C1orf232A0A0U1RR37 186 aa16.46■□□□□ 0.23
VPS54-201ENST00000272322 CCDC154A6NI56 674 aa16.46■□□□□ 0.23
VPS54-201ENST00000272322 OR6C75A6NL08 312 aa16.46■□□□□ 0.23
VPS54-201ENST00000272322 MTX2O75431 263 aa16.46■□□□□ 0.23
VPS54-201ENST00000272322 CLDN7O95471 211 aa16.46■□□□□ 0.23
VPS54-201ENST00000272322 IST1P53990 364 aa16.46■□□□□ 0.23
VPS54-201ENST00000272322 LIPEQ05469 1076 aa16.46■□□□□ 0.23
VPS54-201ENST00000272322 TMEM214Q6NUQ4 689 aaKnown RBP16.46■□□□□ 0.23
VPS54-201ENST00000272322 RFLNAQ6ZTI6 216 aa16.46■□□□□ 0.23
VPS54-201ENST00000272322 APCDD1Q8J025 514 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms