RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 MTFMTQ96DP5 389 aaKnown RBP15.62■□□□□ 0.09
CPSF1-213ENST00000620219 PPP1R16AQ96I34 528 aa15.62■□□□□ 0.09
CPSF1-213ENST00000620219 NLE1Q9NVX2 485 aaPredicted RBP15.62■□□□□ 0.09
CPSF1-213ENST00000620219 IL36AQ9UHA7 158 aa15.62■□□□□ 0.09
CPSF1-213ENST00000620219 C1QTNF3-AMACRE9PGA6 284 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 FFAR3O14843 346 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 GPR42O15529 346 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 SH3BP5O60239 455 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 HOXB8P17481 243 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 OGNP20774 298 aaKnown RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 DGKAP23743 735 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 PDGFRLQ15198 375 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 PLA2G4EQ3MJ16 856 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 CDYL2Q8N8U2 506 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 ACTR8Q9H981 624 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 SIRPGQ9P1W8 387 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 MTF2Q9Y483 593 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 TIMM22Q9Y584 194 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 RAD51BO15315 384 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 CDK14O94921 469 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 PAPSS2O95340 614 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 C1QAP02745 245 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 CCNFP41002 786 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 NUDT2P50583 147 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 SGCGQ13326 291 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 LACTB2Q53H82 288 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 ZYG11AQ6WRX3 759 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 CYS1Q717R9 158 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 TMC8Q8IU68 726 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 ADGRG2Q8IZP9 1017 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 TEX26Q8N6G2 289 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 RNF148Q8N7C7 305 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 METTL6Q8TCB7 284 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 RIPOR3Q96MK2 946 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 RIOK2Q9BVS4 552 aaKnown RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 FAM126AQ9BYI3 521 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 LHX3Q9UBR4 397 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 ZNHIT2Q9UHR6 403 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 TRPC5OSA6NMA1 111 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 DNAJC8O75937 253 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 PRNPP04156 253 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 CHRM1P11229 460 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 ACADMP11310 421 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 ZNF648Q5T619 568 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 TPRG1Q6ZUI0 275 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 ZNF683Q8IZ20 524 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 PRKAG3Q9UGI9 489 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 INTS6Q9UL03 887 aaKnown RBP15.61■□□□□ 0.09
CPSF1-213ENST00000620219 NEU3Q9UQ49 428 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 ITM2BQ9Y287 266 aa15.61■□□□□ 0.09
CPSF1-213ENST00000620219 H3BNC9 293 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 PEX11BO96011 259 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 SLC25A3Q00325 362 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 ADCK2Q7Z695 626 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 TRIM74Q86UV6 250 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 EEF1AKMT1Q8WVE0 214 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 CLPTM1LQ96KA5 538 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 C7orf26Q96N11 449 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 NDRG2Q9UN36 371 aaKnown RBP15.6■□□□□ 0.09
CPSF1-213ENST00000620219 SLC12A4Q9UP95 1085 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 RAP2CQ9Y3L5 183 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 ENTPD5O75356 428 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 DHRS4L1P0CG22 281 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 COL6A2P12110 1019 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 PTGER3P43115 390 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 SOX9P48436 509 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 AFMIDQ63HM1 303 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 PDE12Q6L8Q7 609 aaKnown RBP15.6■□□□□ 0.09
CPSF1-213ENST00000620219 PIP4K2CQ8TBX8 421 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 BOCQ9BWV1 1114 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 TREX1Q9NSU2 369 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 CCDC167Q9P0B6 97 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 HDAC3O15379 428 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 COPAP53621 1224 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 TANGO2Q6ICL3 276 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 CERS6Q6ZMG9 384 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 CPXM2Q8N436 756 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 ANKRD49Q8WVL7 239 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 AARSD1Q9BTE6 412 aaKnown RBP15.6■□□□□ 0.09
CPSF1-213ENST00000620219 MRM3Q9HC36 420 aaKnown RBP15.6■□□□□ 0.09
CPSF1-213ENST00000620219 NPIPB15A6NHN6 443 aaPredicted RBP15.6■□□□□ 0.09
CPSF1-213ENST00000620219 CYP17A1P05093 508 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 ETV3P41162 512 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 SKIV2L2P42285 1042 aaKnown RBP15.6■□□□□ 0.09
CPSF1-213ENST00000620219 CCNG1P51959 295 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 CUZD1Q86UP6 607 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 IFNEQ86WN2 208 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 TCF12Q99081 682 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 OSBPL1AQ9BXW6 950 aa15.6■□□□□ 0.09
CPSF1-213ENST00000620219 RANBP2P49792 3224 aaKnown RBP15.59■□□□□ 0.09
CPSF1-213ENST00000620219 PDE5AO76074 875 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 PTPN4P29074 926 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 LEPRP48357 1165 aaKnown RBP15.59■□□□□ 0.09
CPSF1-213ENST00000620219 AGKQ53H12 422 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 TMEM198Q66K66 360 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 CHRDL2Q6WN34 429 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 SNX20Q7Z614 316 aa15.59■□□□□ 0.09
CPSF1-213ENST00000620219 SYTL1Q8IYJ3 562 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms