RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 Q96MT0 163 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 PNPLA8Q9NP80 782 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 EIF2B3Q9NR50 452 aaKnown RBP13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SAMD4AQ9UPU9 718 aaKnown RBP13.94□□□□□ -0.18
CPSF1-212ENST00000616140 ZNF541Q9H0D2 1346 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 A0A088AWK7 358 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 AGRPO00253 132 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 TAF4O00268 1085 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 PDE9AO76083 593 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 OR4F21O95013 312 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 PIGRP01833 764 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 SMPD1P17405 629 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 ZNF10P21506 573 aaPredicted RBP13.93□□□□□ -0.18
CPSF1-212ENST00000616140 TAB1Q15750 504 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 CPTPQ5TA50 214 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 REP15Q6BDI9 236 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 SLC39A4Q6P5W5 647 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.93□□□□□ -0.18
CPSF1-212ENST00000616140 CPNE9Q8IYJ1 553 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 DCAKDQ8WVC6 231 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 PPCDCQ96CD2 204 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 MINDY3Q9H8M7 445 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 CRNNQ9UBG3 495 aaPredicted RBP13.93□□□□□ -0.18
CPSF1-212ENST00000616140 NDOR1Q9UHB4 597 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 SH3GLB1Q9Y371 365 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 PIP5K1BO14986 540 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 CAPN1P07384 714 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 CYP3A5P20815 502 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 PPIBP23284 216 aaKnown RBP13.93□□□□□ -0.18
CPSF1-212ENST00000616140 GPAT3Q53EU6 434 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 C16orf62Q7Z3J2 963 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 R3HCC1LQ7Z5L2 792 aaKnown RBP13.93□□□□□ -0.18
CPSF1-212ENST00000616140 LEMD2Q8NC56 503 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 MTMR14Q8NCE2 650 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 SCAMP5Q8TAC9 235 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 TDRD1Q9BXT4 1180 aaKnown RBP13.93□□□□□ -0.18
CPSF1-212ENST00000616140 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.93□□□□□ -0.185e-7■□□□□ 10.1
CPSF1-212ENST00000616140 ELOVL7A1L3X0 281 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 SLC7A4O43246 635 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 CDK14O94921 469 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 PRAMEF1O95521 474 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 GOT2P00505 430 aaKnown RBP13.93□□□□□ -0.18
CPSF1-212ENST00000616140 ELFN1P0C7U0 828 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 PRDX6P30041 224 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 HTR7P34969 479 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 DMPKQ09013 629 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 BHLHB9Q6PI77 547 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 IZUMO1Q8IYV9 350 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 CENPNQ96H22 339 aaPredicted RBP13.93□□□□□ -0.18
CPSF1-212ENST00000616140 OLFM1Q99784 485 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 C1QTNF7Q9BXJ2 289 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 TPK1Q9H3S4 243 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 KCTD5Q9NXV2 234 aa13.93□□□□□ -0.18
CPSF1-212ENST00000616140 NR2F6P10588 404 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 NR4A1P22736 598 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 SMIM11AP58511 58 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 PRKD1Q15139 912 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 THAP5Q7Z6K1 395 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 NAT16Q8N8M0 369 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 MCFD2Q8NI22 146 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 POP5Q969H6 163 aaKnown RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 SPATA5L1Q9BVQ7 753 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 SLC39A8Q9C0K1 460 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 ARIH1Q9Y4X5 557 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 PIK3C2AO00443 1686 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 ARL5CA6NH57 179 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 FYNP06241 537 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 ADH1AP07327 375 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 GTF2E2P29084 291 aaKnown RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 TLX1P31314 330 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 SLC1A2P43004 574 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 CTSKP43235 329 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 RPIAP49247 311 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 MSS51Q4VC12 460 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 CRTC3Q6UUV7 619 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 DEF8Q6ZN54 512 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 EIF2B4Q9UI10 523 aaKnown RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 SERPINB7O75635 380 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 GPIP06744 558 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 THRBP10828 461 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 MAGP20916 626 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 UGT2B15P54855 530 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 GPX6P59796 221 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 SP2Q02086 613 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 LPIN1Q14693 890 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 SLC9B1Q4ZJI4 515 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 TMEM63BQ5T3F8 832 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 HLA-DQA1Q5Y7H0 255 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 KIAA0930Q6ICG6 404 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 TMEM214Q6NUQ4 689 aaKnown RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 RGMBQ6NW40 437 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 FAM81AQ8TBF8 368 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 ANKRD49Q8WVL7 239 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 CAPSLQ8WWF8 208 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 PCDHAC1Q9H158 963 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 ACSL4O60488 711 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 ASGR1P07306 291 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 SLC35G4P0C7Q5 338 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 COL6A1P12109 1028 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms