RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.65□□□□□ -1.51
CPNE3-208ENST00000614678 COL5A1P20908 1838 aaPredicted RBP5.65□□□□□ -1.51
CPNE3-208ENST00000614678 SNRNP200O75643 2136 aaKnown RBP5.64□□□□□ -1.51
CPNE3-208ENST00000614678 LMO7DNF2Z398 122 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 GOLGA8MH3BSY2 632 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 LDB2O43679 373 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 PIAS1O75925 651 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 SLC25A14O95258 325 aaPredicted RBP5.64□□□□□ -1.51
CPNE3-208ENST00000614678 ITIH1P19827 911 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 ITPKBP27987 946 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 ALDH4A1P30038 563 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 ACTR1BP42025 376 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 ACTR1AP61163 376 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 CCL7P80098 99 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 CCDC15Q0P6D6 951 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 OVGP1Q12889 678 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 SEMA3AQ14563 771 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 UNQ6494/PRO21346Q6UXR6 183 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 ZNF574Q6ZN55 896 aaPredicted RBP5.64□□□□□ -1.51
CPNE3-208ENST00000614678 C11orf96Q7Z7L8 435 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 GLRX5Q86SX6 157 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 UBL4BQ8N7F7 174 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 DENND6BQ8NEG7 585 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 FATE1Q969F0 183 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 FAM136AQ96C01 138 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 PPM1MQ96MI6 270 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 CCDC3Q9BQI4 270 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 FSD1LQ9BXM9 530 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 ZMIZ1Q9ULJ6 1067 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 ZNF148Q9UQR1 794 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 SLC17A4Q9Y2C5 497 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 RAXQ9Y2V3 346 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 PRSS21Q9Y6M0 314 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 CACNB4O00305 520 aaPredicted RBP5.64□□□□□ -1.51
CPNE3-208ENST00000614678 B4GAT1O43505 415 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 SGTAO43765 313 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 OR1I1O60431 355 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 CYP2A6P11509 494 aaPredicted RBP5.64□□□□□ -1.51
CPNE3-208ENST00000614678 CKMT1AP12532 417 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 PTPN7P35236 360 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 XIAPP98170 497 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 ST3GAL2Q16842 350 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 HP1BP3Q5SSJ5 553 aaPredicted RBP5.64□□□□□ -1.51
CPNE3-208ENST00000614678 C6orf132Q5T0Z8 1188 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 C19orf48Q6RUI8 117 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 ZNF534Q76KX8 674 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 UNC5BQ8IZJ1 945 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 RNF10Q8N5U6 811 aaKnown RBP5.64□□□□□ -1.51
CPNE3-208ENST00000614678 RASGEF1AQ8N9B8 481 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 ASB12Q8WXK4 309 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 HIC2Q96JB3 615 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 LUC7LQ9NQ29 371 aaKnown RBP5.64□□□□□ -1.51
CPNE3-208ENST00000614678 NLGN3Q9NZ94 848 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 IQCF5A8MTL0 148 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 TLX3O43711 291 aaPredicted RBP5.64□□□□□ -1.51
CPNE3-208ENST00000614678 RFPL3O75679 317 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 DPP6P42658 865 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 SEPT6Q14141 434 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 GSE1Q14687 1217 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 SUZ12Q15022 739 aaKnown RBP5.64□□□□□ -1.51
CPNE3-208ENST00000614678 BRD3Q15059 726 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 CCNI2Q6ZMN8 369 aaPredicted RBP5.64□□□□□ -1.51
CPNE3-208ENST00000614678 TBATAQ96M53 351 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 SEMA6CQ9H3T2 930 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 OSGEPL1Q9H4B0 414 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 MAGEE1Q9HCI5 957 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 WDR70Q9NW82 654 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 PADI4Q9UM07 663 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 PCDHGB2Q9Y5G2 931 aa5.64□□□□□ -1.51
CPNE3-208ENST00000614678 EME2A4GXA9 379 aaPredicted RBP5.63□□□□□ -1.51
CPNE3-208ENST00000614678 OPA1O60313 960 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 FOXD2O60548 495 aaPredicted RBP5.63□□□□□ -1.51
CPNE3-208ENST00000614678 APRTP07741 180 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 JUPP14923 745 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 CSF2RBP32927 897 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 HMGCLP35914 325 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 COPS2P61201 443 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 YPEL5P62699 121 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 DPTQ07507 201 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 NFATC2Q13469 925 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 NFE2L1Q14494 772 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 CLCA4Q14CN2 919 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 LONRF2Q1L5Z9 754 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 TMPRSS7Q7RTY8 843 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 GDAP1Q8TB36 358 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 SKA1Q96BD8 255 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 TBC1D10AQ9BXI6 508 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 ADGRE3Q9BY15 652 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 CHRAC1Q9NRG0 131 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 RAB6BQ9NRW1 208 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 KLC4Q9NSK0 619 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 KLHL3Q9UH77 587 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 DOLKQ9UPQ8 538 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 TMEM63AO94886 807 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 PRAMEF1O95521 474 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 TNFP01375 233 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 ANXA6P08133 673 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 ACP1P24666 158 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 HTR1BP28222 390 aa5.63□□□□□ -1.51
CPNE3-208ENST00000614678 SESN2P58004 480 aaPredicted RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms