RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 HMGCLL1Q8TB92 370 aa13.52□□□□□ -0.24
NEK3-205ENST00000610828 TWIST2Q8WVJ9 160 aa13.52□□□□□ -0.24
NEK3-205ENST00000610828 RPL10LQ96L21 214 aaKnown RBP13.52□□□□□ -0.24
NEK3-205ENST00000610828 GCNAQ96QF7 691 aa13.52□□□□□ -0.24
NEK3-205ENST00000610828 MYCBPQ99417 103 aaPredicted RBP13.52□□□□□ -0.24
NEK3-205ENST00000610828 LRRC3Q9BY71 257 aa13.52□□□□□ -0.24
NEK3-205ENST00000610828 ZFYVE1Q9HBF4 777 aa13.52□□□□□ -0.24
NEK3-205ENST00000610828 KIAA1522Q9P206 1035 aaPredicted RBP13.52□□□□□ -0.24
NEK3-205ENST00000610828 STX16-NPEPL1H3BU86 382 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 LEFTY2O00292 366 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 PRAMEF1O95521 474 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 TSPAN12O95859 305 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 FGF4P08620 206 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 MSX2P35548 267 aaPredicted RBP13.52□□□□□ -0.25
NEK3-205ENST00000610828 DPP6P42658 865 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 LCP2Q13094 533 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 MAPRE2Q15555 327 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 PIGGQ5H8A4 983 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 ANKS6Q68DC2 871 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 CCDC149Q6ZUS6 474 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 DDIASQ8IXT1 998 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 GPR65Q8IYL9 337 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 STK40Q8N2I9 435 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 KLHL23Q8NBE8 558 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 KREMEN2Q8NCW0 462 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.52□□□□□ -0.25
NEK3-205ENST00000610828 ZNF184Q99676 751 aaPredicted RBP13.52□□□□□ -0.25
NEK3-205ENST00000610828 AKTIPQ9H8T0 292 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 DENND4CQ5VZ89 1909 aa13.52□□□□□ -0.25
NEK3-205ENST00000610828 A0A0J9YYE9 177 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.51□□□□□ -0.25
NEK3-205ENST00000610828 EIF4E1BA6NMX2 242 aaKnown RBP13.51□□□□□ -0.25
NEK3-205ENST00000610828 A8MX80 341 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 PIP5K1BO14986 540 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 CCL16O15467 120 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 TRBC1P01850 177 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 ADH1AP07327 375 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 AGTR2P50052 363 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 ADARP55265 1226 aaKnown RBP13.51□□□□□ -0.25
NEK3-205ENST00000610828 STX5Q13190 355 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 PLEKHG6Q3KR16 790 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 CMPK2Q5EBM0 449 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 MPP7Q5T2T1 576 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 LILRA6Q6PI73 481 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 DHDDSQ86SQ9 333 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 KBTBD2Q8IY47 623 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 FIBINQ8TAL6 211 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 SLC22A17Q8WUG5 538 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 NAT14Q8WUY8 206 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 SLC46A2Q9BY10 475 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 ASAH2Q9NR71 780 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 TSR3Q9UJK0 312 aaKnown RBP13.51□□□□□ -0.25
NEK3-205ENST00000610828 ANKRD12Q6UB98 2062 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 A0A1B0GTL3 188 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 PRMT5O14744 637 aaPredicted RBP13.51□□□□□ -0.25
NEK3-205ENST00000610828 BNIP3LO60238 219 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 CRCPO75575 148 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 BAIAP3O94812 1187 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 CLDN7O95471 211 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 ALDOCP09972 364 aaKnown RBP13.51□□□□□ -0.25
NEK3-205ENST00000610828 XRCC1P18887 633 aaPredicted RBP13.51□□□□□ -0.25
NEK3-205ENST00000610828 CD9P21926 228 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 STX1BP61266 288 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 CEACAM7Q14002 265 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 FLOT2Q14254 428 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 ZNF423Q2M1K9 1284 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 KANK2Q63ZY3 851 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 KBTBD6Q86V97 674 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 CMTM8Q8IZV2 173 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 OR9I1Q8NGQ6 314 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 P2RY12Q9H244 342 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 CXorf56Q9H5V9 222 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 ATP13A3Q9H7F0 1226 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 ABCB8Q9NUT2 735 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 UTP6Q9NYH9 597 aaKnown RBP13.51□□□□□ -0.25
NEK3-205ENST00000610828 INTS6Q9UL03 887 aaKnown RBP13.51□□□□□ -0.25
NEK3-205ENST00000610828 COMMD10Q9Y6G5 202 aa13.51□□□□□ -0.25
NEK3-205ENST00000610828 SNX2O60749 519 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 ZNF821O75541 412 aaPredicted RBP13.5□□□□□ -0.25
NEK3-205ENST00000610828 IGSF6O95976 241 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 CYBBP04839 570 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 HNF1BP35680 557 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 CTSOP43234 321 aaPredicted RBP13.5□□□□□ -0.25
NEK3-205ENST00000610828 MAPK8P45983 427 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 STK19P49842 368 aaPredicted RBP13.5□□□□□ -0.25
NEK3-205ENST00000610828 PTK2BQ14289 1009 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 KIF19Q2TAC6 998 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 DGKKQ5KSL6 1271 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 UGT3A1Q6NUS8 523 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 IZUMO2Q6UXV1 221 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 RNF111Q6ZNA4 994 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 GPSM1Q86YR5 675 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 PCDH20Q8N6Y1 951 aaKnown RBP13.5□□□□□ -0.25
NEK3-205ENST00000610828 ZNF784Q8NCA9 323 aaPredicted RBP13.5□□□□□ -0.25
NEK3-205ENST00000610828 ESAMQ96AP7 390 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 CCDC97Q96F63 343 aaPredicted RBP13.5□□□□□ -0.25
NEK3-205ENST00000610828 ASB8Q9H765 288 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 HCFC1R1Q9NWW0 138 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 CD274Q9NZQ7 290 aa13.5□□□□□ -0.25
NEK3-205ENST00000610828 GIMAP2Q9UG22 337 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms