RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 RBM22Q9NW64 420 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS53-213ENST00000572334 WDR70Q9NW82 654 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 GOLGA6AQ9NYA3 693 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 KCNK4Q9NYG8 393 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 SEPT10Q9P0V9 454 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 SCHIP1Q9P0W5 487 aaPredicted RBP6.66□□□□□ -1.34
VPS53-213ENST00000572334 IL17BQ9UHF5 180 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 AMACRQ9UHK6 382 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 CAPN11Q9UMQ6 739 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 SHANK1Q9Y566 2161 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 LOC101059948A0A1B0GTJ6 334 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 C3orf70A6NLC5 250 aaPredicted RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 EFCAB7A8K855 629 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 ANKRD66B4E2M5 251 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 DUX1O43812 170 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 RAD1O60671 282 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 PROSCO94903 275 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 DLGAP3O95886 979 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 SERPING1P05155 500 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 ZNF8P17098 575 aaPredicted RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 CSRP3P50461 194 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 UBE2IP63279 158 aaKnown RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 GPLD1P80108 840 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 ZBED6P86452 979 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 MC2RQ01718 297 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 HHEXQ03014 270 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 ITKQ08881 620 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 LRP8Q14114 963 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 KRT81Q14533 505 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 TERF2Q15554 542 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 IFI16Q16666 785 aaKnown RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 ASTE1Q2TB18 679 aaPredicted RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 KHDC1Q4VXA5 237 aaKnown RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 TDRD12Q587J7 1177 aaKnown RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 WDR74Q6RFH5 385 aaPredicted RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 PRICKLE2Q7Z3G6 844 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 LUZP1Q86V48 1076 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 GALNT13Q8IUC8 556 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 PLD5Q8N7P1 536 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 AGBL5Q8NDL9 886 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 CCDC112Q8NEF3 446 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 LPCAT1Q8NF37 534 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 ZNF564Q8TBZ8 553 aaPredicted RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 NSMCE1Q8WV22 266 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 RAPGEF5Q92565 580 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 DPYSL5Q9BPU6 564 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 TBC1D10AQ9BXI6 508 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 FAM107BQ9H098 131 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 NAT10Q9H0A0 1025 aaKnown RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 RBSNQ9H1K0 784 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 RASSF4Q9H2L5 321 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 PCDH9Q9HC56 1237 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 ARFGAP3Q9NP61 516 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 SIDT1Q9NXL6 827 aaKnown RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 SLC39A1Q9NY26 324 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 VPS18Q9P253 973 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 ATXN10Q9UBB4 475 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 SLC23A2Q9UGH3 650 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 TMPRSS11EQ9UL52 423 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 KCNK6Q9Y257 313 aa6.65□□□□□ -1.34
VPS53-213ENST00000572334 TMEM184BQ9Y519 407 aaPredicted RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 BZW2Q9Y6E2 419 aaKnown RBP6.65□□□□□ -1.34
VPS53-213ENST00000572334 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.65□□□□□ -1.34
VPS53-213ENST00000572334 ANKRD12Q6UB98 2062 aa6.65□□□□□ -1.35
VPS53-213ENST00000572334 HIVEP3Q5T1R4 2406 aa6.65□□□□□ -1.35
VPS53-213ENST00000572334 C1orf232A0A0U1RR37 186 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 A8MU76 341 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 MYO1FO00160 1098 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 KCNK1O00180 336 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 AURKAO14965 403 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 CHUKO15111 745 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 NKX2-8O15522 239 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 NUAK1O60285 661 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 ASMTLO95671 621 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 SERPINC1P01008 464 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 JCHAINP01591 159 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 PYGLP06737 847 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 ACP5P13686 325 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 F3P13726 295 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 BRAFP15056 766 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 ZNF28P17035 718 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 CES1P23141 567 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 F8A1P23610 371 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 KDELR1P24390 212 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 NFKBIAP25963 317 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 OAS2P29728 719 aaKnown RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 HNRNPH3P31942 346 aaKnown RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 CSTF2P33240 577 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS53-213ENST00000572334 CA5AP35218 305 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 GJC1P36383 396 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 CD86P42081 329 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 CLCNKAP51800 687 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 POLE2P56282 527 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 RPL26P61254 145 aaKnown RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 IFI35P80217 286 aaPredicted RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 PPIDQ08752 370 aaKnown RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 NFATC2Q13469 925 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 GALNT3Q14435 633 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 PDK2Q15119 407 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 SNAP47Q5SQN1 464 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms