RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 CCT5P48643 541 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 DRG2P55039 364 aaKnown RBP3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 GNB1P62873 340 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 TBX2Q13207 712 aaPredicted RBP3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 MAD2L1Q13257 205 aaPredicted RBP3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 KRTCAP3Q53RY4 240 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 ANO5Q75V66 913 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 NOTCH2NLQ7Z3S9 236 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 APLFQ8IW19 511 aaPredicted RBP3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 RBM15BQ8NDT2 890 aaKnown RBP3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 NFKBIDQ8NI38 313 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 FCAMRQ8WWV6 532 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 PSPC1Q8WXF1 523 aaKnown RBP3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 PHF21AQ96BD5 680 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 RRNAD1Q96FB5 475 aaKnown RBP3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 NR1H4Q96RI1 486 aaPredicted RBP3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 LRMDAQ9H2I8 198 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 PCDHB16Q9NRJ7 776 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 TCP11L1Q9NUJ3 509 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 ABI3Q9P2A4 366 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 HAO1Q9UJM8 370 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 CYP46A1Q9Y6A2 500 aa3.1□□□□□ -1.91
HMGB1P33-201ENST00000563485 A0A1W2PP11 408 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 C5orf60A6NFR6 353 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 TMEM178BH3BS89 294 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 M0QZ24 198 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 NKX2-2O95096 273 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 BAG4O95429 457 aaKnown RBP3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 MLYCDO95822 493 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 ERVK-10P10266 1014 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 CSF2RAP15509 400 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 ZNF182P17025 639 aaPredicted RBP3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 UGT1A1P22309 533 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 UBA1P22314 1058 aaKnown RBP3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 CHRNB4P30926 498 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 MYLK3Q32MK0 819 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 CDONQ4KMG0 1287 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 TECRLQ5HYJ1 363 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 LCE3CQ5T5A8 94 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 ZC2HC1BQ5TFG8 222 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 PAPD4Q6PIY7 484 aaKnown RBP3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 ATG9AQ7Z3C6 839 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 PIWIL4Q7Z3Z4 852 aaKnown RBP3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 TRPT1Q86TN4 253 aaKnown RBP3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 DBF4BQ8NFT6 615 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 TRIM58Q8NG06 486 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 ST8SIA4Q92187 359 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 SAAL1Q96ER3 474 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 LRR1Q96L50 414 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 PRKRIP1Q9H875 184 aaPredicted RBP3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 SAGE1Q9NXZ1 904 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 KLHL9Q9P2J3 617 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 GJD2Q9UKL4 321 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 NAALADL1Q9UQQ1 740 aa3.09□□□□□ -1.91
HMGB1P33-201ENST00000563485 CCDC196A0A1B0GTZ2 297 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 C1orf226A1L170 272 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 KCNN4O15554 427 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 EXTL3O43909 919 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 CD48P09326 243 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 PRSS56P0CW18 603 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 ZNF23P17027 643 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 EPHA8P29322 1005 aaPredicted RBP3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 MAPK9P45984 424 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 HARS2P49590 506 aaKnown RBP3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 EIF3BP55884 814 aaKnown RBP3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 BIRC3Q13489 604 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 OLIG2Q13516 323 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 DCTN2Q13561 401 aaKnown RBP3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 ZC2HC1CQ53FD0 456 aaPredicted RBP3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 FAM53AQ6NSI3 398 aaPredicted RBP3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 CDC73Q6P1J9 531 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 TSSK4Q6SA08 328 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 RBMS3Q6XE24 437 aaKnown RBP3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 PLEKHM3Q6ZWE6 761 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 DNAAF4Q8WXU2 420 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 TMEM190Q8WZ59 177 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 ARHGEF26Q96DR7 871 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 HARBI1Q96MB7 349 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 SMC6Q96SB8 1091 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 BICC1Q9H694 974 aaKnown RBP3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 LUZP4Q9P127 313 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 OR14J1Q9UGF5 321 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 JRKLQ9Y4A0 524 aa3.08□□□□□ -1.92
HMGB1P33-201ENST00000563485 TP53BP1Q12888 1972 aaPredicted RBP3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 IGKV3D-20A0A0C4DH25 116 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 A0A1W2PPI3 338 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 EIF3CLB5ME19 914 aaKnown RBP3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 HHLA1C9JL84 531 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 KCNK5O95279 499 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 CAVIN2O95810 425 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 GNB3P16520 340 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 HOXC8P31273 242 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 ICAM3P32942 547 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 TUBP50607 506 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 MBTD1Q05BQ5 628 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 CDC16Q13042 620 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 ACVR2BQ13705 512 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 KIR2DS3Q14952 304 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 LCN10Q6JVE6 187 aa3.07□□□□□ -1.92
HMGB1P33-201ENST00000563485 KRTAP5-1Q6L8H4 278 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms