RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 GALNT13Q8IUC8 556 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 HID1Q8IV36 788 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 LMNTD2Q8IXW0 634 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 IFT20Q8IY31 132 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 PHACTR4Q8IZ21 702 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 NXPE1Q8N323 547 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 MINDY1Q8N5J2 469 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.99□□□□□ -0.81
USP3-216ENST00000559873 CALML6Q8TD86 181 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 ART4Q93070 314 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 COX14Q96I36 57 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 ZNF514Q96K75 400 aaPredicted RBP9.99□□□□□ -0.81
USP3-216ENST00000559873 TBATAQ96M53 351 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 PHOX2BQ99453 314 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 COPS8Q99627 209 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 EBNA1BP2Q99848 306 aaKnown RBP9.99□□□□□ -0.81
USP3-216ENST00000559873 CARS2Q9HA77 564 aaKnown RBP9.99□□□□□ -0.81
USP3-216ENST00000559873 EPB41L5Q9HCM4 733 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 TRIM39Q9HCM9 518 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 TREX1Q9NSU2 369 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 CATSPERZQ9NTU4 200 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 GRHL1Q9NZI5 618 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 SPASTQ9UBP0 616 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 APOBEC3BQ9UH17 382 aaKnown RBP9.99□□□□□ -0.81
USP3-216ENST00000559873 SLC17A4Q9Y2C5 497 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 DGKBQ9Y6T7 804 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 ZNF106Q9H2Y7 1883 aaKnown RBP9.99□□□□□ -0.81
USP3-216ENST00000559873 RALGAPA1Q6GYQ0 2036 aa9.99□□□□□ -0.81
USP3-216ENST00000559873 PCDH15Q96QU1 1955 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 A0A1B0GTQ1 180 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 ESYT3A0FGR9 886 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 PRSS38A1L453 326 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 CCDC162PA2VCL2 907 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 NEMP2A6NFY4 417 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 TMEM202A6NGA9 273 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 AGAP14A8MT82 685 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 E7ESA3 106 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 QSOX1O00391 747 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 CCL22O00626 93 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 GOT2P00505 430 aaKnown RBP9.98□□□□□ -0.81
USP3-216ENST00000559873 TNFP01375 233 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 IVLP07476 585 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 ALPPL2P10696 532 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 CTSEP14091 401 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 JUNDP17535 347 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 VCLP18206 1134 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 EPHA8P29322 1005 aaPredicted RBP9.98□□□□□ -0.81
USP3-216ENST00000559873 RXRGP48443 463 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 TTPAP49638 278 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 HK3P52790 923 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 LIMK1P53667 647 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 SRP54P61011 504 aaKnown RBP9.98□□□□□ -0.81
USP3-216ENST00000559873 ARHGAP8P85298 464 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 XIAPP98170 497 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 BNC1Q01954 994 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 ILF3Q12906 894 aaKnown RBP eCLIP9.98□□□□□ -0.812e-6■■■■□ 21.5
USP3-216ENST00000559873 SLC14A1Q13336 389 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 THOC5Q13769 683 aaKnown RBP9.98□□□□□ -0.81
USP3-216ENST00000559873 LRP8Q14114 963 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 ITIH4Q14624 930 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 ELOCQ15369 112 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 LONRF1Q17RB8 773 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 ALG11Q2TAA5 492 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 SPANXN3Q5MJ09 141 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 FNBP1LQ5T0N5 605 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 GPRC6AQ5T6X5 926 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 RNF187Q5TA31 235 aaPredicted RBP9.98□□□□□ -0.81
USP3-216ENST00000559873 TAS2R42Q7RTR8 314 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 SDCCAG8Q86SQ7 713 aaPredicted RBP9.98□□□□□ -0.81
USP3-216ENST00000559873 TMEM135Q86UB9 458 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 TRIM74Q86UV6 250 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 ZBED8Q8IZ13 594 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 PELI3Q8N2H9 469 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 DCLK2Q8N568 766 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 OR4L1Q8NH43 312 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 FBXO25Q8TCJ0 367 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 SCG3Q8WXD2 468 aaKnown RBP9.98□□□□□ -0.81
USP3-216ENST00000559873 HDAC10Q969S8 669 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 MFSD3Q96ES6 412 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 PDXPQ96GD0 296 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 SGSM3Q96HU1 749 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 SIGLEC10Q96LC7 697 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 FMO2Q99518 471 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 FAM167BQ9BTA0 163 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 LGR4Q9BXB1 951 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 VPS37BQ9H9H4 285 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 CYP4F12Q9HCS2 524 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 FGF22Q9HCT0 170 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 PARD6AQ9NPB6 346 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 DNAAF2Q9NVR5 837 aaKnown RBP9.98□□□□□ -0.81
USP3-216ENST00000559873 SLC2A6Q9UGQ3 507 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 ZC3H7BQ9UGR2 993 aaKnown RBP9.98□□□□□ -0.81
USP3-216ENST00000559873 CHMP2BQ9UQN3 213 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 VPS9D1Q9Y2B5 631 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 PCDHGB2Q9Y5G2 931 aa9.98□□□□□ -0.81
USP3-216ENST00000559873 MYLKQ15746 1914 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 DOCK9Q9BZ29 2069 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 TRBV5-4A0A0C4DH59 114 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 KLHL33A6NCF5 533 aa9.97□□□□□ -0.81
USP3-216ENST00000559873 GAPDHSO14556 408 aaPredicted RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms