RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 FOXK1P85037 733 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 SLC25A11Q02978 314 aaKnown RBP9.07□□□□□ -0.96
HDDC3-204ENST00000559834 MMRN1Q13201 1228 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 PAFAH1B3Q15102 231 aaKnown RBP9.07□□□□□ -0.96
HDDC3-204ENST00000559834 NFKBIBQ15653 356 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 DEFB109BQ30KR1 87 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 TDRD12Q587J7 1177 aaKnown RBP9.07□□□□□ -0.96
HDDC3-204ENST00000559834 FIGNQ5HY92 759 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 HENMT1Q5T8I9 393 aaKnown RBP9.07□□□□□ -0.96
HDDC3-204ENST00000559834 TXNRD3NBQ6F5E7 133 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 C16orf46Q6P387 395 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 TIPARPQ7Z3E1 657 aaKnown RBP9.07□□□□□ -0.96
HDDC3-204ENST00000559834 UNC5BQ8IZJ1 945 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 FAM71BQ8TC56 605 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 STARD8Q92502 1023 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 SYN2Q92777 582 aaPredicted RBP9.07□□□□□ -0.96
HDDC3-204ENST00000559834 ABHD17AQ96GS6 310 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 SMIM14Q96QK8 99 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 BPIFA3Q9BQP9 254 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 NUP85Q9BW27 656 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 THAP2Q9H0W7 228 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 EPN3Q9H201 632 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 UCK1Q9HA47 277 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 TRIM39Q9HCM9 518 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 ZNF71Q9NQZ8 489 aaPredicted RBP9.07□□□□□ -0.96
HDDC3-204ENST00000559834 ANKMY1Q9P2S6 941 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 CPNE7Q9UBL6 633 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 KLHL3Q9UH77 587 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 CNOT6Q9ULM6 557 aaKnown RBP9.07□□□□□ -0.96
HDDC3-204ENST00000559834 KCTD3Q9Y597 815 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 A0A1B0GTH6 734 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 A6NCN8 305 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 MKRN2OSH3BPM6 223 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 SLC25A14O95258 325 aaPredicted RBP9.06□□□□□ -0.96
HDDC3-204ENST00000559834 SERPINC1P01008 464 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 VIPP01282 170 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 SERPING1P05155 500 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 CYP1A2P05177 515 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 ANKRD34CP0C6C1 535 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 CCNYL3P0C7X3 344 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 FOXM1Q08050 763 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 IL11RAQ14626 422 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 NR1I3Q14994 352 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 QPCTQ16769 361 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 ANO6Q4KMQ2 910 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 LACTB2Q53H82 288 aaPredicted RBP9.06□□□□□ -0.96
HDDC3-204ENST00000559834 ZFYVE27Q5T4F4 411 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 E4F1Q66K89 784 aaPredicted RBP9.06□□□□□ -0.96
HDDC3-204ENST00000559834 NCBP2-AS2Q69YL0 99 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 CCDC70Q6NSX1 233 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 CYB5D1Q6P9G0 228 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 C6orf15Q6UXA7 325 aaPredicted RBP9.06□□□□□ -0.96
HDDC3-204ENST00000559834 TRIM48Q8IWZ4 208 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 CCNYQ8ND76 341 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 ARRDC2Q8TBH0 407 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 BTBD6Q96KE9 485 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 C9orf72Q96LT7 481 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 ZNF830Q96NB3 372 aaPredicted RBP9.06□□□□□ -0.96
HDDC3-204ENST00000559834 PLEKHG4BQ96PX9 1271 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 WDR24Q96S15 920 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 ZNF670Q9BS34 389 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 ZSCAN5AQ9BUG6 496 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 SPATA16Q9BXB7 569 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 ULBP3Q9BZM4 244 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 OSGEPL1Q9H4B0 414 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 ZFYVE1Q9HBF4 777 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 APMAPQ9HDC9 416 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 PRDM8Q9NQV8 689 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 KLC4Q9NSK0 619 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 ATXN10Q9UBB4 475 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 LCMT1Q9UIC8 334 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 KCND3Q9UK17 655 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 OAS3Q9Y6K5 1087 aaKnown RBP9.06□□□□□ -0.96
HDDC3-204ENST00000559834 RPS6KL1Q9Y6S9 549 aa9.06□□□□□ -0.96
HDDC3-204ENST00000559834 FADS2P1A8MWK0 482 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 KMOO15229 486 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 MFSD11O43934 449 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 MTA2O94776 668 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 UBXN7O94888 489 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 DLGAP3O95886 979 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 RECKO95980 971 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 JCHAINP01591 159 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 C9P02748 559 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 HLA-DQB2P05538 268 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 KRT7P08729 469 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 CD48P09326 243 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 ZNF8P17098 575 aaPredicted RBP9.05□□□□□ -0.96
HDDC3-204ENST00000559834 OAS2P29728 719 aaKnown RBP9.05□□□□□ -0.96
HDDC3-204ENST00000559834 STAT5AP42229 794 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 ARSEP51690 589 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 NIPAL4Q0D2K0 466 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 KLRB1Q12918 225 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 DPYSL3Q14195 570 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 IHHQ14623 411 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 IGFBP7Q16270 282 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 ATP13A4Q4VNC1 1196 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 PDPK2PQ6A1A2 396 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 ALKBH5Q6P6C2 394 aaKnown RBP9.05□□□□□ -0.96
HDDC3-204ENST00000559834 TMEM26Q6ZUK4 368 aa9.05□□□□□ -0.96
HDDC3-204ENST00000559834 ATCAYQ86WG3 371 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms