RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SNX20Q7Z614 316 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 IQCHQ86VS3 1027 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 OR4L1Q8NH43 312 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 PYROXD1Q8WU10 500 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 UBXN4Q92575 508 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 C9orf72Q96LT7 481 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 VPS35Q96QK1 796 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 FMO2Q99518 471 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 FAM129AQ9BZQ8 928 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 FOXP3Q9BZS1 431 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 FGF22Q9HCT0 170 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 PARD6AQ9NPB6 346 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 MRPL40Q9NQ50 206 aaKnown RBP12.71□□□□□ -0.37
SHMT2-227ENST00000557269 SUSD2Q9UGT4 822 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.71□□□□□ -0.37
SHMT2-227ENST00000557269 SLC30A1Q9Y6M5 507 aa12.71□□□□□ -0.37
SHMT2-227ENST00000557269 DMDP11532 3685 aa12.71□□□□□ -0.38
SHMT2-227ENST00000557269 BPTFQ12830 3046 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 MYO15AQ9UKN7 3530 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SPTY2D1-AS1A0A0U1RR47 76 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SCAMP1O15126 338 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SLC25A14O95258 325 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-227ENST00000557269 CEACAM5P06731 702 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 PYGLP06737 847 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 POLBP06746 335 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 ERVK-10P10266 1014 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 ITGALP20701 1170 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 TGM1P22735 817 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SSTR1P30872 391 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 CTSKP43235 329 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 THOP1P52888 689 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 C21orf59P57076 290 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 KIAA1024LP59773 190 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 VSNL1P62760 191 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 B4GALNT1Q00973 533 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SPEM2Q0P670 501 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 OVGP1Q12889 678 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 GRIK2Q13002 908 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 ITGA9Q13797 1035 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SF3A2Q15428 464 aaKnown RBP12.7□□□□□ -0.38
SHMT2-227ENST00000557269 TEAD4Q15561 434 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 DBN1Q16643 649 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 LONRF1Q17RB8 773 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SPANXN3Q5MJ09 141 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 PDPK2PQ6A1A2 396 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 AFTPHQ6ULP2 937 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 ENPP7Q6UWV6 458 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 CCNI2Q6ZMN8 369 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-227ENST00000557269 TAS2R42Q7RTR8 314 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 ADGRG6Q86SQ4 1221 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SERPINA9Q86WD7 417 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 NXPE1Q8N323 547 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.7□□□□□ -0.38
SHMT2-227ENST00000557269 OR2I1PQ8NGU4 316 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 CEP76Q8TAP6 659 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 OR1E3Q8WZA6 343 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 TSACCQ96A04 125 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SGSM3Q96HU1 749 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 NAT9Q9BTE0 207 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 BOCQ9BWV1 1114 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 PHACTR1Q9C0D0 580 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 TCEAL2Q9H3H9 227 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-227ENST00000557269 PHPT1Q9NRX4 125 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-227ENST00000557269 C20orf96Q9NUD7 363 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SMOXQ9NWM0 555 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SLC17A6Q9P2U8 582 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 ATXN10Q9UBB4 475 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 MTRF1LQ9UGC7 380 aaKnown RBP12.7□□□□□ -0.38
SHMT2-227ENST00000557269 CRLS1Q9UJA2 301 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 GMEB2Q9UKD1 530 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SLC6A14Q9UN76 642 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 SLC17A4Q9Y2C5 497 aa12.7□□□□□ -0.38
SHMT2-227ENST00000557269 PCDH15Q96QU1 1955 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 CACNB4O00305 520 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-227ENST00000557269 TOR1BO14657 336 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 CD3EAPO15446 510 aaKnown RBP12.69□□□□□ -0.38
SHMT2-227ENST00000557269 PIAS1O75925 651 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 TTC4O95801 387 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 ACRV1P26436 265 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 TNFRSF8P28908 595 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 DPP6P42658 865 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 TUBB4BP68371 445 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 SHBQ15464 509 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 KYNUQ16719 465 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 ALG11Q2TAA5 492 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 GPR33Q49SQ1 333 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 HSP90AA5PQ58FG0 334 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 NEPROQ6NW34 567 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 MACC1Q6ZN28 852 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 MARK2Q7KZI7 788 aaKnown RBP12.69□□□□□ -0.38
SHMT2-227ENST00000557269 RELL1Q8IUW5 271 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 CCNJLQ8IV13 435 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 RASGEF1AQ8N9B8 481 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 DDHD1Q8NEL9 900 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 OR56A4Q8NGH8 313 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 GDAP1Q8TB36 358 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 FAM174AQ8TBP5 190 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 PDXPQ96GD0 296 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 WDR92Q96MX6 357 aa12.69□□□□□ -0.38
SHMT2-227ENST00000557269 PARD6BQ9BYG5 372 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms