RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 E9PBE3 544 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 BNIP3LO60238 219 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 KLHL41O60662 606 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 BMP1P13497 986 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 CHRM3P20309 590 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 IL2P60568 153 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 NAA20P61599 178 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 KDSRQ06136 332 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 LSM12Q3MHD2 195 aaKnown RBP26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 TMEM215Q68D42 235 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 ARHGAP24Q8N264 748 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 DEFB123Q8N688 67 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 SIDT2Q8NBJ9 832 aaKnown RBP26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 MAELQ96JY0 434 aaKnown RBP26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 SLC30A3Q99726 388 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 WDR55Q9H6Y2 383 aaPredicted RBP26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 RNF112Q9ULX5 631 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 DHRS7Q9Y394 339 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 A8MUI8 341 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 UBXN8O00124 270 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 SLC22A2O15244 555 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 TSPAN12O95859 305 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 RECQLP46063 649 aaPredicted RBP26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 CPA2P48052 419 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 DUSP6Q16828 381 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 DNAL1Q4LDG9 190 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 WASHC2DQ5SRD0 308 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 Q6ZVU0 165 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 GIMAP7Q8NHV1 300 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 MAGEC3Q8TD91 643 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 WFIKKN2Q8TEU8 576 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 OSCP1Q8WVF1 389 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 CMTM5Q96DZ9 223 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 CLPBQ9H078 707 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 DUS2Q9NX74 493 aaKnown RBP26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 NUP210Q8TEM1 1887 aaPredicted RBP26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 SZT2Q5T011 3432 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 HOXC11O43248 304 aaPredicted RBP26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 SUPT7LO94864 414 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 ADSLP30566 484 aaPredicted RBP26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 POLR2LP62875 67 aaKnown RBP26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 NAA25Q14CX7 972 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 ZDHHC20Q5W0Z9 365 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 GDPD4Q6W3E5 623 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 TSPAN33Q86UF1 283 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 CPSF7Q8N684 471 aaKnown RBP26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 NAT16Q8N8M0 369 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 RBM15BQ8NDT2 890 aaKnown RBP26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 OR2A12Q8NGT7 310 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 EXT2Q93063 718 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 MCUR1Q96AQ8 359 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 PDLIM5Q96HC4 596 aaKnown RBP26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 MRGPRX3Q96LB0 322 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 LRRC3BQ96PB8 259 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 LMAN2LQ9H0V9 348 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 GNPTGQ9UJJ9 305 aa26.12■■□□□ 1.77
CCDC88C-205ENST00000553403 LAMA3Q16787 3333 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 GOLGA8QA0A0J9YX86 632 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 GOLGA8OA6NCC3 632 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 GOLGA8NF8WBI6 632 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 NEMP1O14524 444 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 GPR39O43194 453 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 CYP17A1P05093 508 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 UGT2B4P06133 528 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 ACRV1P26436 265 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 EPHA3P29320 983 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 NNMTP40261 264 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 CLCN7P51798 805 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 KLF10Q13118 480 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 TSNQ15631 228 aaKnown RBP26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 CHRNA6Q15825 494 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 PDCD2Q16342 344 aaPredicted RBP26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 CHST14Q8NCH0 376 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 FRS2Q8WU20 508 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 HEPHQ9BQS7 1158 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 CRLS1Q9UJA2 301 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 IKZF3Q9UKT9 509 aa26.11■■□□□ 1.77
CCDC88C-205ENST00000553403 AGAP14A8MT82 685 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 SUPT3HB4E1H0 165 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 DCXO43602 365 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 KLK8O60259 260 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 SUPT3HO75486 399 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 ECI2O75521 394 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 ASLP04424 464 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 CISD3P0C7P0 127 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 ADH5P11766 374 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 GFAPP14136 432 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 PFKFB4Q16877 469 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 GEN1Q17RS7 908 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 LRRC66Q68CR7 880 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 PTRHD1Q6GMV3 140 aaKnown RBP26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 BRAT1Q6PJG6 821 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 FBXO39Q8N4B4 442 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 C12orf76Q8N812 135 aaPredicted RBP26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 FUBP1Q96AE4 644 aaKnown RBP26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 LINGO1Q96FE5 620 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 ASIC4Q96FT7 647 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 OSBPL1AQ9BXW6 950 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 BRD9Q9H8M2 597 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 SFXN1Q9H9B4 322 aa26.1■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 199.4 ms