RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	SETD4	Q9NVD3	440 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	THAP1	Q9NVV9	213 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	FAM118A	Q9NWS6	357 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	IL1RAPL1	Q9NZN1	696 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	PEMT	Q9UBM1	199 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	RAB21	Q9UL25	225 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	TRPC5	Q9UL62	973 aa	Predicted RBP	4.21	□□□□□ -1.74
USP44-208	ENST00000552440	DNPEP	Q9ULA0	475 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	PLAGL1	Q9UM63	463 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	ARHGEF11	O15085	1522 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	FAM230A	A0A1W2PPH8	454 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	C5orf51	A6NDU8	294 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	MFSD2B	A6NFX1	497 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	STMND1	H3BQB6	276 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	PLSCR1	O15162	318 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	CTIF	O43310	598 aa	Known RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	IDH1	O75874	414 aa	Known RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	AGFG2	O95081	481 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	VNN2	O95498	520 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	TRUB2	O95900	331 aa	Known RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	SERPING1	P05155	500 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	ENO1	P06733	434 aa	Known RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	VIM	P08670	466 aa	Known RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	UBTFL6	P0CB48	400 aa	Predicted RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	CCDC130	P13994	396 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	MGAT1	P26572	445 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	NTSR1	P30989	418 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	FRK	P42685	505 aa	Predicted RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	GABRB2	P47870	512 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	CLRN1	P58418	232 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	TNFRSF17	Q02223	184 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	ABR	Q12979	859 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	KCNC3	Q14003	757 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	TBR1	Q16650	682 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	ZIK1	Q3SY52	487 aa	Predicted RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	SH2D4B	Q5SQS7	431 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	C6orf163	Q5TEZ5	329 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	CES3	Q6UWW8	571 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	KIAA1324	Q6UXG2	1013 aa	Known RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	CENPV	Q7Z7K6	275 aa	Predicted RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	ZNF410	Q86VK4	478 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	ZNF573	Q86YE8	665 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	SERPINA12	Q8IW75	414 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	MFN1	Q8IWA4	741 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	UXS1	Q8NBZ7	420 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	CCNY	Q8ND76	341 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	TSPAN14	Q8NG11	270 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	SUN3	Q8TAQ9	357 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	BPIFB1	Q8TDL5	484 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	ACTRT2	Q8TDY3	377 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	LPGAT1	Q92604	370 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	PEX13	Q92968	403 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	FBXO32	Q969P5	355 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	PHF21B	Q96EK2	531 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	C14orf79	Q96F83	325 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	PHACTR3	Q96KR7	559 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	NSMCE2	Q96MF7	247 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	ZNF560	Q96MR9	790 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	KLHL32	Q96NJ5	620 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	OR2A14	Q96R47	310 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	USP28	Q96RU2	1077 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	SSX3	Q99909	188 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	RIOK1	Q9BRS2	568 aa	Known RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	WDR83	Q9BRX9	315 aa	Known RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	INPP5K	Q9BT40	448 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	GPR61	Q9BZJ8	451 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	IQCG	Q9H095	443 aa	Known RBP	4.2	□□□□□ -1.74
USP44-208	ENST00000552440	HAUS4	Q9H6D7	363 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	USP29	Q9HBJ7	922 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	KLC4	Q9NSK0	619 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	C20orf141	Q9NUB4	165 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	HDAC6	Q9UBN7	1215 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	HESX1	Q9UBX0	185 aa		4.2	□□□□□ -1.74
USP44-208	ENST00000552440	KIF16B	Q96L93	1317 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440		A0A0A6YYC8	382 aa	Predicted RBP	4.19	□□□□□ -1.74
USP44-208	ENST00000552440		A0A1B0GVM2	712 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	SERTM2	A0A1B0GWG4	89 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	KRTAP23-1	A1A580	65 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	CDHR4	A6H8M9	788 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	LRRC53	A6NM62	1247 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440		H0Y8G0	127 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440		I3L1I5	382 aa	Predicted RBP	4.19	□□□□□ -1.74
USP44-208	ENST00000552440	POLRMT	O00411	1230 aa	Known RBP	4.19	□□□□□ -1.74
USP44-208	ENST00000552440	PLK4	O00444	970 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	ATP2A1	O14983	1001 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	ST8SIA3	O43173	380 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	SCGB2A1	O75556	95 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	OR6B1	O95007	311 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	SLC16A8	O95907	504 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	LIPF	P07098	398 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	GALT	P07902	379 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	C8orf89	P0DMQ9	161 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	HSPA8	P11142	646 aa	Known RBP	4.19	□□□□□ -1.74
USP44-208	ENST00000552440	RALA	P11233	206 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	HGF	P14210	728 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	ACP1	P24666	158 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	PTBP1	P26599	531 aa	Known RBP eCLIP	4.19	□□□□□ -1.74
USP44-208	ENST00000552440	RFC2	P35250	354 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	MAGEA8	P43361	318 aa		4.19	□□□□□ -1.74
USP44-208	ENST00000552440	NR2C2	P49116	596 aa		4.19	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms