RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 FMN1Q68DA7 1419 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 ZNF425Q6IV72 752 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 B3GNT6Q6ZMB0 384 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 HIST3H2AQ7L7L0 130 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 KRT74Q7RTS7 529 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 CACNA2D4Q7Z3S7 1137 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 C1QL2Q7Z5L3 287 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 IRF2BP2Q7Z5L9 587 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 PRPF39Q86UA1 669 aaKnown RBP4.93□□□□□ -1.62
LIMA1-205ENST00000550592 SCML4Q8N228 414 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 SLC22A18Q96BI1 424 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 SLF1Q9BQI6 1058 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 HAUS8Q9BT25 410 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 MMTAG2Q9BU76 263 aaKnown RBP4.93□□□□□ -1.62
LIMA1-205ENST00000550592 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.93□□□□□ -1.62
LIMA1-205ENST00000550592 PPP1R3EQ9H7J1 279 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 MMP25Q9NPA2 562 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 GIMAP4Q9NUV9 329 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 MTMR10Q9NXD2 777 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 UBA2Q9UBT2 640 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-205ENST00000550592 MORF4L1Q9UBU8 362 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 R3HDM2Q9Y2K5 976 aaKnown RBP4.93□□□□□ -1.62
LIMA1-205ENST00000550592 UTRNP46939 3433 aa4.93□□□□□ -1.62
LIMA1-205ENST00000550592 SLIT2O94813 1529 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 EFCAB6Q5THR3 1501 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 DLC1Q96QB1 1528 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 PIK3R4Q99570 1358 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 PLEKHG1Q9ULL1 1385 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 ATP10DQ9P241 1426 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 A0A1B0GVT2 93 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 OR6C75A6NL08 312 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 INAFM1C9JVW0 142 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 SH2B2O14492 632 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-205ENST00000550592 CTDSP2O14595 271 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 TNFRSF13BO14836 293 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-205ENST00000550592 P4HA2O15460 535 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 PAPSS1O43252 624 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-205ENST00000550592 ZIC3O60481 467 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 TUBBP07437 444 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 G6PDP11413 515 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 IL11P20809 199 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 SAT1P21673 171 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 HOXD3P31249 432 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-205ENST00000550592 EIF2S3P41091 472 aaKnown RBP4.92□□□□□ -1.62
LIMA1-205ENST00000550592 SLC15A1P46059 708 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 HSD17B4P51659 736 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 ABATP80404 500 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 LRMPQ12912 555 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 EFNB3Q15768 340 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 NTRK2Q16620 822 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 RARS2Q5T160 578 aaKnown RBP4.92□□□□□ -1.62
LIMA1-205ENST00000550592 TAOK1Q7L7X3 1001 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 ADGRA1Q86SQ6 560 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 TICAM2Q86XR7 235 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 NEXN-AS1Q8NBZ9 246 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 TRPC4APQ8TEL6 797 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 HMCESQ96FZ2 354 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 EGLN2Q96KS0 407 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 MAGIXQ9H6Y5 334 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 ACSS1Q9NUB1 689 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-205ENST00000550592 WSB2Q9NYS7 404 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-205ENST00000550592 FBXW11Q9UKB1 542 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 ACSL5Q9ULC5 683 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 TTC7AQ9ULT0 858 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-205ENST00000550592 FZD10Q9ULW2 581 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 CDC14AQ9UNH5 594 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 EXO1Q9UQ84 846 aaKnown RBP4.92□□□□□ -1.62
LIMA1-205ENST00000550592 CLIC4Q9Y696 253 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 MYOM2P54296 1465 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 ZNF644Q9H582 1327 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-205ENST00000550592 CDC42BPAQ5VT25 1732 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 SHANK3Q9BYB0 1731 aa4.92□□□□□ -1.62
LIMA1-205ENST00000550592 ADGRB2O60241 1585 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 NRKQ7Z2Y5 1582 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 B4DGG1 531 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 ATP2A1O14983 1001 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 MITFO75030 526 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-205ENST00000550592 ANXA7P20073 488 aaKnown RBP4.91□□□□□ -1.62
LIMA1-205ENST00000550592 UBA1P22314 1058 aaKnown RBP4.91□□□□□ -1.62
LIMA1-205ENST00000550592 KRT20P35900 424 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 RPL3P39023 403 aaKnown RBP4.91□□□□□ -1.62
LIMA1-205ENST00000550592 NRIP1P48552 1158 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 AMTP48728 403 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 MXI1P50539 228 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 Q0VFX4 171 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 PNLIPRP3Q17RR3 467 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 EIF2S3LQ2VIR3 472 aaKnown RBP4.91□□□□□ -1.62
LIMA1-205ENST00000550592 GARNL3Q5VVW2 1013 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 TMCO3Q6UWJ1 677 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 TECPR1Q7Z6L1 1165 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 ZC3HC1Q86WB0 502 aaKnown RBP4.91□□□□□ -1.62
LIMA1-205ENST00000550592 ZNF575Q86XF7 245 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 IL17RCQ8NAC3 791 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 OR8K5Q8NH50 307 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 ZNF778Q96MU6 729 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 SLC29A3Q9BZD2 475 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 FAM234AQ9H0X4 552 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 RBM38Q9H0Z9 239 aaKnown RBP4.91□□□□□ -1.62
LIMA1-205ENST00000550592 CNGB3Q9NQW8 809 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 MRPL15Q9P015 296 aaKnown RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms