RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CPTPQ5TA50 214 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 MACC1Q6ZN28 852 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 SLC35F5Q8WV83 523 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 ANKRD49Q8WVL7 239 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 NUS1Q96E22 293 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 SAMD11Q96NU1 681 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 OR2AG1Q9H205 316 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 SMOC2Q9H3U7 446 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 EPS8L2Q9H6S3 715 aa14.02□□□□□ -0.16
USP3-204ENST00000540797 LRRC14BA6NHZ5 514 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 SLC7A4O43246 635 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 SLC22A3O75751 556 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 C9orf64Q5T6V5 341 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 C17orf99Q6UX52 265 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 ZNF280BQ86YH2 543 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 ADGRG2Q8IZP9 1017 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 SCAIQ8N9R8 606 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 IPPKQ9H8X2 491 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 EIF2B3Q9NR50 452 aaKnown RBP14.02□□□□□ -0.17
USP3-204ENST00000540797 ELOVL2Q9NXB9 296 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 DNAJB4Q9UDY4 337 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 PLLPQ9Y342 182 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 WNT9AO14904 365 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 SLC25A12O75746 678 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 CLDN9O95484 217 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 TRBC1P01850 177 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 IQCF3P0C7M6 154 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 ZCCHC18P0CG32 403 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 GNPDA1P46926 289 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 MRPS22P82650 360 aaKnown RBP14.02□□□□□ -0.17
USP3-204ENST00000540797 CAMK1DQ8IU85 385 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 TSSK3Q96PN8 268 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 SMOQ99835 787 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 SEMA6AQ9H2E6 1030 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 CD248Q9HCU0 757 aa14.02□□□□□ -0.17
USP3-204ENST00000540797 ERN1O75460 977 aaKnown RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 HLA-DQA2P01906 255 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 EDNRBP24530 442 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 HSPA7P48741 367 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 SLC34A1Q06495 639 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 LAPTM5Q13571 262 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 SLC9A5Q14940 896 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 FASTKD3Q14CZ7 662 aaKnown RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 CMTM8Q8IZV2 173 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 DLG3Q92796 817 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 FCRL5Q96RD9 977 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 IL23AQ9NPF7 189 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 SEMA3GQ9NS98 782 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 SLC9A8Q9Y2E8 581 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 HS3ST4Q9Y661 456 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 TRAFD1O14545 582 aaPredicted RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 SERPINB7O75635 380 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 CFHP08603 1231 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 PPIDQ08752 370 aaKnown RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 UBAP2LQ14157 1087 aaKnown RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 PPM1JQ5JR12 505 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 IRGCQ6NXR0 463 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 METTL21AQ8WXB1 218 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 BTBD9Q96Q07 612 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 LRTM1Q9HBL6 345 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 DDX28Q9NUL7 540 aaKnown RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 H3BNH8 94 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 PRKCGP05129 697 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 CFIP05156 583 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 OGNP20774 298 aaKnown RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 GRIA3P42263 894 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 MAGEA11P43364 429 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 TAF13Q15543 124 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 DRICH1Q6PGQ1 229 aaPredicted RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 ZNF605Q86T29 641 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 SIDT2Q8NBJ9 832 aaKnown RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 OR52L1Q8NGH7 329 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 SRMSQ9H3Y6 488 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 COPG1Q9Y678 874 aaKnown RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 ARL5AQ9Y689 179 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 ARFGEF2Q9Y6D5 1785 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 SLC28A2O43868 658 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 PDE9AO76083 593 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 MYL12AP19105 171 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 PPIBP23284 216 aaKnown RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 PSMB9P28065 219 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 GDF10P55107 478 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 HTRA3P83110 453 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 SLC39A5Q6ZMH5 540 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 CLHC1Q8NHS4 586 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 NOL11Q9H8H0 719 aaKnown RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 SLCO1B3Q9NPD5 702 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 COPG2Q9UBF2 871 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 SIX4Q9UIU6 781 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 PIRO00625 290 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 ITGA2P17301 1181 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 MPSTP25325 297 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 CHRNA4P43681 627 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 HCAR3P49019 387 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 DHPSP49366 369 aaPredicted RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 ACAP2Q15057 778 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 MSANTD2Q6P1R3 559 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 ZNF607Q96SK3 696 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 WDR26Q9H7D7 661 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 TBC1D23Q9NUY8 699 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms